RNA id: TCONS_00052839


Basic Information

Item Value
RNA id TCONS_00052839
length 1264
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_025873
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60438114 ~ 60439578 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCCCTGCAAATCAAATAAGCCTGACTCTAGATCAGAAGAACTGAGCCCTTTAGGCACTGTCAGACCTGATGACCTGAAACCGCGATTTCATCTTTTAGGTGTTGCATTTTCCTCTATGCTTGGTTCACTTTAGTAGATAACAATTTAAAGTATACCAGAATGTAGGTCACATGTGAATATATCAGTTTTCTCTTTGGTCAAAGTGAACCATTTTACCCCACATTCATCAAAACGAATTGACAAGTTCTCTCCAAGGGCTAGTTATTTTAGCATTTCGTGACACATCCACATATAGCTGTGACtgatacattatttacatttaattataccTAAATACTTATTACACTGCAAGAATCAAGACCGCGCAGAGAAGAGCAATTACACACTATTTTAAGATGAAGAGGCACTCTGGTTTTCAGCTGTGATAACGAATGTCCTCGCTCACAGAATCAGACTCTGTAACACATTTCCTCTTATGAATTATGATACTACTTGGTTCACTGGTCCGTTGGGTCGGCTTGCCTTTTCACCTAAAATGAACCTCCCCGGACTTTGTTTTCCATTCTCCAGAAGATCTCAGACCATTTTTGTGCAGATCTAAACGGTCATGTTCAGATATGCCTTAACAAATGGAAATGAGATAGAACAAACTTACCTAATTCTGAAACAAATGTTATACCAAAATAGAAAACTGCATCAGAAACTGTATCCACAtaggctcattctgaaaatctagtcctgtatacatttttggagatcgtgaattatgtagccagaggcacgtatggctgcatttcgtctttaaaacaaatgctacgaaGTGGCATGACCCCGTTCCTTTCCACGCttatcagctgaccgcttacctccatgtggacggcttttccggtgttaccagtttgtccaatggCTCGCCGTATGCGTGGGTAGACTTGTGATGTGCAGCAGAGTTGACCAAGACTATTGGGTTCAGGTTGTGGCAAAGAATGGTATAGAAAGCAggtataacaaaaaacaaaaattaaaataagtacattacaaggtgagaatgtggtaaaatctgaaaacattgtgaaaatcaggctgccgcaagggcttttctttttctggattgcttttgataACACTGTTGGTTAGAATTAGAAAAGGCGGTGGGTgttggtcaatctgtgcttttgataaaacttttggttgggtttaggggaggaggaGGGATCGTTCAGTagatcagtcagtcaacagcggcctctggtggatttatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052838 lncRNA upstream 36247 60383122 ~ 60401867 (+) True XLOC_025871
TCONS_00052395 lncRNA upstream 49219 60388249 ~ 60388895 (+) True XLOC_025872
TCONS_00052837 lncRNA upstream 80142 60356214 ~ 60357972 (+) True XLOC_025870
TCONS_00052836 lncRNA upstream 370346 60066388 ~ 60067768 (+) True XLOC_025868
TCONS_00052835 lncRNA upstream 394217 60037550 ~ 60043897 (+) True XLOC_025865
TCONS_00052840 lncRNA downstream 103535 60543113 ~ 60544139 (+) False XLOC_025874
TCONS_00052841 lncRNA downstream 103562 60543140 ~ 60544139 (+) False XLOC_025874
TCONS_00052842 lncRNA downstream 103696 60543274 ~ 60544139 (+) False XLOC_025874
TCONS_00052843 lncRNA downstream 103697 60543275 ~ 60544139 (+) False XLOC_025874
TCONS_00052845 lncRNA downstream 103698 60543276 ~ 60544139 (+) False XLOC_025874
TCONS_00050740 mRNA upstream 155732 60277300 ~ 60282382 (+) True XLOC_025857
TCONS_00050739 mRNA upstream 212087 60177774 ~ 60226027 (+) True XLOC_025869
TCONS_00050737 mRNA upstream 363509 60044780 ~ 60074605 (+) True XLOC_025866
TCONS_00050738 mRNA upstream 382705 60047032 ~ 60055409 (+) True XLOC_025867
TCONS_00050736 mRNA upstream 401629 60034221 ~ 60036485 (+) True XLOC_025864
TCONS_00050741 mRNA downstream 149579 60589157 ~ 60592979 (+) True XLOC_025875
TCONS_00050742 mRNA downstream 167663 60607241 ~ 60624039 (+) True XLOC_025876
TCONS_00050745 mRNA downstream 277326 60716904 ~ 60733722 (+) False XLOC_025879
TCONS_00050746 mRNA downstream 281764 60721342 ~ 60733722 (+) True XLOC_025879
TCONS_00050747 mRNA downstream 322233 60761811 ~ 60795831 (+) True XLOC_025880
TCONS_00050717 other upstream 1727359 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 2267700 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 2439555 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 2608195 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 2798666 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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