RNA id: TCONS_00052840


Basic Information

Item Value
RNA id TCONS_00052840
length 787
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id XLOC_025874
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60543113 ~ 60544139 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttgctcgaaataacgcaaaaacaaccaattttcactttttagtgagatataggtgtcctaatagtgtttttagcagtgtgggacacatttaccactgtcaacagctcaaaacatgtgttctggtgtttcgtgaccctttaagagtaCTGATGCATACATACCGTTATTCTCGAAGACCTCTGGGGCTGAAGATTCCGGGACAGATTCTGCTTCAGTGGCAGGTACAGACAGTGGCTCTGGGGTGGACACAGGCTCTGGCTCAGTTACTGGGGCGGGCACAGGTGCTGGTTCAGGGCTTGGCACAGACACTGGTTCAGGGATGGGCACATCTTGGACTCGTTCAGGCACTGGTTCCTGGACAGACTCTTTCACTGCTTCTGATGCTGGAACGGACTCCTTTACTGGTTCAGGCACAGGTTCTGGGATAGACTCCTTCACTGGTTCAGGCACAAGATCTGGTACTGGGACGGACTCCTTTACTGGTTTAGGCACAGGTTCAGATGCTGGGACAGACTCCTTTACGGGTTCTGGTGCTTGGACAGGCGCCTTCACAGGTTCTGTTACATGGACAGACTCTTCCACAGATTTTGGTGCTGGGACAGGTGCCTTTACAGGTTCTGGTGCAGAAATAGTCTCTTGCACAATTTCTGGGGCTGGGACCGGCTTCTTGGTGGGTTCTGGCTCTGTGACGGGTTCTGGCACAGATTTTAGCTCTTCTACAGGTGCAGATTCTACAACTGCTTCAGGTACAGGCTCAGGCTTGGGCTCTGGCTCTGGAGTTGCCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052839 lncRNA upstream 103535 60438114 ~ 60439578 (+) True XLOC_025873
TCONS_00052838 lncRNA upstream 141246 60383122 ~ 60401867 (+) True XLOC_025871
TCONS_00052395 lncRNA upstream 154218 60388249 ~ 60388895 (+) True XLOC_025872
TCONS_00052837 lncRNA upstream 185141 60356214 ~ 60357972 (+) True XLOC_025870
TCONS_00052836 lncRNA upstream 475345 60066388 ~ 60067768 (+) True XLOC_025868
TCONS_00050743 lncRNA downstream 102597 60646736 ~ 60647950 (+) False XLOC_025877
TCONS_00050744 lncRNA downstream 103334 60647473 ~ 60648234 (+) True XLOC_025877
TCONS_00052846 lncRNA downstream 133095 60677234 ~ 60684970 (+) True XLOC_025878
TCONS_00052847 lncRNA downstream 253284 60797423 ~ 60798872 (+) True XLOC_025881
TCONS_00052848 lncRNA downstream 317108 60861247 ~ 60862752 (+) True XLOC_025883
TCONS_00050740 mRNA upstream 260731 60277300 ~ 60282382 (+) True XLOC_025857
TCONS_00050739 mRNA upstream 317086 60177774 ~ 60226027 (+) True XLOC_025869
TCONS_00050737 mRNA upstream 468508 60044780 ~ 60074605 (+) True XLOC_025866
TCONS_00050738 mRNA upstream 487704 60047032 ~ 60055409 (+) True XLOC_025867
TCONS_00050736 mRNA upstream 506628 60034221 ~ 60036485 (+) True XLOC_025864
TCONS_00050741 mRNA downstream 45018 60589157 ~ 60592979 (+) True XLOC_025875
TCONS_00050742 mRNA downstream 63102 60607241 ~ 60624039 (+) True XLOC_025876
TCONS_00050745 mRNA downstream 172765 60716904 ~ 60733722 (+) False XLOC_025879
TCONS_00050746 mRNA downstream 177203 60721342 ~ 60733722 (+) True XLOC_025879
TCONS_00050747 mRNA downstream 217672 60761811 ~ 60795831 (+) True XLOC_025880
TCONS_00050717 other upstream 1832358 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 2372699 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 2544554 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 2713194 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 2903665 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

//