RNA id: TCONS_00004817



Basic Information


Item Value
RNA id TCONS_00004817
length 3545
RNA type mRNA
GC content 0.47
exon number 14
gene id XLOC_002588
representative False

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7916720 ~ 7974155 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGACCGAGCTGGTGGTGCGGACTCTTCCGTCTCCTTCAGGTGTCCAAGGTCCCGGTCCGGACACTTATAAAGGATGGCTCTTTAAATGGACCAACTACCTGAAGGGGTACCAGCGCCGGTGGTTCGTGCTGAGCAACGGCCTCCTGTCCTACTACAGGACTCAAGCGGAGATGGCACACACCTGCCGTGGCACAATTACCTTGGCGACGGTGCACATAGAAGTGGGCGACACCTGTCACTTTGTGTTGACGAGTGGTGGGCGGAGCTACCACCTCAAGGCCTATTCAGAGGGCGAGTGCCAGCGCTGGGTTTCAGCTCTGCAACAGGCCAAAGCAAACGCCACCCATATGATGCCCCATTCAGATGACTCAGGAGACGAGGGTCCTCTAGCCCAGCCAGACCGTGCTCTTATCCAGGGGGCGCTCAAGACTCTGGTCAGCAAGCTTGAAGATCTCAGCACCTGCAACGAGCTGATAGGGAAGCACGGTGCAGCTCTCCAGCGCTCCCTCAGTGAACTTGAAGACCTGCGCGCTCCCACCGACGGTACCGATAAACTGAAAACAGTCAACGAGAGGGCCACACTCTTCCGCATCACTTCCAATGCTATGATCAATGCCTGTCAGGACTTTGTGGATCTAGCAGAGGGACACAGCCGGCGGTGGCAGCGTGCATTGCAGTATGAAAGGGAACAGCGCCACCACCTGGAGGAGACAATTGAGCAGCTAGCCAAACAGCACAACAGTCTGGAGAGAGCCTGGAGAGAGTCCCCCAGCACACTCAACCAAGCAGCAGAGGGAACACTGGAGGGAGAATCCAGTGAAGAGAATGAAGACATAGAGTTCTTTGATGCCATGGAAGATTCTCCAGCCTTCATCACAGTGCCTGCGGACAATCACTCACAGCACAGaCTCTTGAGCAGTAACCAGAGCGTGACCAGTGGAAGTTTATCTAGTAACTGGAGCCAGGACGACAATGTGACAGATAGTTTTGTCTGTTCACAGGACGGTTCTGGTAGTTACCTGCGCAGAGGGAGACGCCGCCGCATCCCGGATAAACCCAACTACTCTCTCAACCTGTGGAGCATCATGAAGAACTGCATTGGCAAAGAGCTCTCCAAAATACCCATGCCTGTGAACTTCAACGAGCCACTGTCGATGCTGCAGCGTTTGACAGAGGATCTGGAGTACAGTGAGCTGCTGGACCGAGCGGCCCGCTGCGACTCGTCTCTGGAGCAGATGTGTTTAGTGGCCGCTTTCTCCGTCTCGTCCTATTCAACCACTGTCCACCGCATAGGGAAGCCCTTCAACCCTCTGCTGGGAGAGACCTATGAGCTGGACCGGCTGGAGGAGTATGGATACCGCTCCATCTGTGAACAGATCAGTCATCATCCTCCAGCGGCGGCACATCACGTCATTTCACAGCGAGGCTGGACTCTGTGGCAGGAGATCACCATCGACAGCAAATTTCGTGGCAAATACATCTCCATCATGCCATTAGGCAACATTCACCTTAAGTTCCACACCAGCGGGAATCATTATGTGTGGAGCAAGGTGACCTCCACCGTGCACAATATTATCGTGGGCAAGCTATGGATTGATCAATCTGGAGACATTATAATAGTGAACCACCGGAGCAAGGACACGTGCCACCTCAAATTCTCCCCTTACAGCTATTTTTCCAGAGATGTTCCCCGCAAGGTCACAGGCGTTGTGACGGATGGTGAAGGCAGCGCACACTACATTCTCTCCGGAACGTGGGATGAGAAAATGGAGAGTGCAAAGATCATAGAGAGCAGCCACGCCTGTGGAGGATCTGAAGGCAAACAGAAAACTGTCTATCAGACTCTCCCACCAAAACTACTGTGGAAGAAATACCCTCTCCCTGAGAATGCAGAGAACATGTATTACTTCTCTTCTCTGGCGTTGACTTTGAATGAGCTGGAGGACGGTATAGCCCCCACTGACAGCCGTCTGCGGCCAGACCAGCGGCTGATGGAGGCTGGGTTGTGGGATGAAGCGAACACCGAGAAACAGCGTCTGGAGGAGCGTCAGAGACTAGAAAGAAGGAAGAGAGATGCACAGGCCAACCTCGCACTCGAAGAGGGTAAGGAGGTGGAGACCTACCAGCCCATCTGGTTTATGAAAAGGACTGACCTAGAGACAGGTGAGAGCAGCTTCATGTACAAAGGAGGCTACTGGGAAGCCAAAGACAGACAGGACTGGAGTCAGTGTCCAGCCATCTTCTAAAGCCTCTCTCCTCAGCCAGGACCAGCCTGCCATTCCAATAATCCTTGAAAACTGCTTTCCAATGTTTTCCAAGGATCTCAAACATGCacagaatatacacattttgtcTTCTAAGGCACCctcgtgtatataaatatatatcttaatTTGCTGTTAGCCTGTATTGAAGCAGGAAAACTTATATTGCATGAACAAAAAAGCACAATAGGTGGCAGCACTTTATAAATGTCCCAGTGACACACACTTATAATGTTAATGATCTGAGGAATGTAACACTTCACCAGGCAAAAGACTCTTCCTCATGCCTGGTTCGCTTCAGGTCAACTGTATAACATCCACCATTGTGTGATAAAAGACGTTCAGCGCATTTATGAAGCATTAGGATCGAGGGCCCTCAAGACCGTGTTCCTCCATTGAGCTGTAGAATAGATAGTAGTAACGCTCCATAAACAACCTAGATAGACTCTAGATCAGTGAATCGATGttgcttttacaaaaaaaaaaaaattactatcaAAGCTGATTTATTCAATAGTAATGTGAGAGTTCTACTCTAGCTGCCCGTTTAGTTATTTAGCACAAGCGTTATGTAAATGTCATTGTGTCGGTGATGAATTAAGGCTTAATTGAGATTCTCCATATACAGTCATGACTAAATGTTtgcaaacatgatacacttgcacaattatttatttatttttggacagATGAGCTATTGCAGGTCATTCAAAATGACTCATCTGCATGCAGTGCAGATTTGTTGAATTATGCAAATTAAGCATGCACTTGGACAGATATGCTAATGGAGTATTCGTCTAACACTGCATCAGGTCACCTTTTGGGTTGTTTGCGAACCTTTGGCTgttgctgtgtttttaatatttgtgGTGGCAATACTTTGTTATTTCCAATATTAGCTGCTAAAGTACATATATGCTACATATGTCATTCACGATGCAAGGAACAGTGGAATATTGACCGTAAACTGTAACCAAAATGAGGGTGAAGGTTAACTCGTATTTGGGCATTAAAAGCAGTTAGGTAAAGTGTATATCATGGAATATTGTAGTACAGTATGTTAAGGACTGATTGAACATGATGTTTATTAATGACtgtgtttgaggttttttttaACCAAAGGTAACGTGTTGTGTGTTTGGAACCACAAGCAATGCAAAAATTACACTTTCCAATGTACTCTGTATTAATCAGACACTAAAAGATGAGTATTAGGATTAGATCACTTGATTATGATGTTGAATATGCTGGATATTGCAATCTAAAGACTTTTAAAATTC

Function


GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0097038 perinuclear endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-091113-18 Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBP2 (oxysterol binding protein 2).

Ensembl:

ensembl_id ENSDART00000147368

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005747 lncRNA downstream 30680 7883753 ~ 7886040 (-) False XLOC_002586
TCONS_00005748 lncRNA downstream 30783 7884013 ~ 7885937 (-) False XLOC_002586
TCONS_00004807 lncRNA downstream 95178 7814644 ~ 7821542 (-) True XLOC_002583
TCONS_00004808 lncRNA downstream 96245 7814644 ~ 7820475 (-) False XLOC_002583
TCONS_00004806 lncRNA downstream 104966 7810664 ~ 7811754 (-) False XLOC_002583
TCONS_00004821 lncRNA upstream 2193 7976348 ~ 7979724 (-) False XLOC_002589
TCONS_00004822 lncRNA upstream 2814 7976969 ~ 7979995 (-) False XLOC_002589
TCONS_00005749 lncRNA upstream 6964 7981119 ~ 7983744 (-) True XLOC_002590
TCONS_00004828 lncRNA upstream 71262 8045417 ~ 8046763 (-) True XLOC_002593
TCONS_00004840 lncRNA upstream 292116 8266271 ~ 8269833 (-) False XLOC_002599
TCONS_00004816 mRNA downstream 3129 7902345 ~ 7913591 (-) True XLOC_002587
TCONS_00004815 mRNA downstream 6881 7901012 ~ 7909839 (-) False XLOC_002587
TCONS_00004812 mRNA downstream 24528 7875076 ~ 7892192 (-) False XLOC_002585
TCONS_00004814 mRNA downstream 31066 7884128 ~ 7885654 (-) True XLOC_002586
TCONS_00004809 mRNA downstream 58167 7831439 ~ 7858553 (-) False XLOC_002584
TCONS_00004820 mRNA upstream 1430 7975585 ~ 7988417 (-) False XLOC_002589
TCONS_00004823 mRNA upstream 4925 7979080 ~ 7988396 (-) True XLOC_002589
TCONS_00004824 mRNA upstream 14591 7988746 ~ 8033468 (-) False XLOC_002591
TCONS_00004825 mRNA upstream 15350 7989505 ~ 8032885 (-) True XLOC_002591
TCONS_00004826 mRNA upstream 60533 8034688 ~ 8041948 (-) True XLOC_002592
TCONS_00004811 other downstream 24036 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other downstream 24854 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004790 other downstream 404597 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 564610 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004780 other downstream 907230 7009374 ~ 7009490 (-) True XLOC_002570
TCONS_00004848 other upstream 701735 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 1042566 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 1063203 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 1167410 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004869 other upstream 1560627 9534782 ~ 9538326 (-) False XLOC_002618

Expression Profile


Expression of TCONS_00004817 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.
//

Expression of TCONS_00004817 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.