RNA id: TCONS_00050741


Basic Information

Item Value
RNA id TCONS_00050741
length 1523
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_025875
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60589157 ~ 60592979 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTATTACCTTCACGCTCCTGTGCGACAGGTCGAAGCTCTTGCAGTATTCGTGTTTGGTCCAGTCGCTTGAGTCCTTCAGCTCGGGTCGGGCGCTCCGTTTCGCTTCTTTGATCCGTTTCTTGCTTTTATGGTTCATTCTTCGCCGTTTCGACGCGTTTTGTCTTTTGCGCGACGCCTTTTAGCTTCGCGTGCTATTGCTAACTGTGCTGTAGTGAAAGTCTATGGAGTCTGGAGACGCTAGTCAGTCACTGGAGGCCTTTGTAGATGTGTGTGCGGCTCTTTAGCCGCAGACTAGACTGTACGCGGTACCGGAATTAAGTTGTATTTATTTCAGAAGACGGAGGTGGTTGCTATACTGAAGGCTTGATAATAAACTAAAGTTAGATAACCTGGCGGCAGCAAGCTTATTTCACGCCTTATGGCGCAATCTAACTGTGTGTTGCTAGCGTCCCGCCCTTTTAGAGCTTCTAGGAATATGATTGGCTGGCCGTTTTACTGTGTACTGTCGGTTTGAACGCCGATTGGCTGTTCGGTGTACGAGTCACTGTCATGTAAACTAAAAGCGAATAGATCATCAATAAAGAAGGAGACCGCCTAAATCAACTAGTGTGATTGGTTAAATGACTGTAACGTCCGAAATTGATTTATATAGCTGAACTATGACAACAGTATTAAGTTAAAACGACGCAATGAGTGAGTTATCTCAAACGCTGATAGTAAAAACATTTACTTTTGAGGGAAGTGGAAACACTCGGTCATTAACTGTGTCTGTTCCTGAGGTTCTTGATCCTCAATATGGCATGTACGTTTGGCCCAGTGCGGTGGTTCTTTCACAGTATGTGTGGATGGCGAGAGAAGAACTACAAAACAAGATGGTTCTTGAGCTGGGTGCTGGTGTGAGTTTGCCCGGTGTTGTGTCTGCACTTTGCGGTGCTGCTGTGATTCTGTCAGACAGCGCTGAACTGCCGCTCTGCCTGGAGAACTGCAGGCGCTCATGTGTCCTCAACAACCTCTCTCATGTACATGTGCTGGGGCTCACCTGGGGACGGGCCTCACCTGAGCTTCTCTCGCTGCCTCCTCTGGACCTTATCCTGGGCTCAGATGTGTTTTATGAGCCTGAAGATTTTGAAGACGTGCTCGTGACCGTCAGCTTTATTTTGAGGAGGAACCCTCATGCTCAATTCTGGACCACTTACCAGGAGAGAAGTGCTGATTGGTCCATAGAGGCCTTGTTGCACAAGTGGGATCTGAAGTGCATTAATGTTCCACTGGAAACTTTTGAGGCAAACAAAACCCATCTGGCTGGATCAACACTGCCTGGAAATCACACTGTACAGATGATGATCATTACAAACAACCGGATTTAACGTGTgtgtaaatacatacacatacatgttTCTTTAAcgttatatataatgtaaataccTTTTTCCAGTTCTTTTTAACTTCATCTCATTAGTAtaaataattagtattttttttatattgcagtATTTCgcattaaataatttttctatttctaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030131-10056 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human METTL23 (methyltransferase like 23).

Ensembl:

ensembl_id ENSDART00000165367

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052840 lncRNA upstream 45018 60543113 ~ 60544139 (+) False XLOC_025874
TCONS_00052841 lncRNA upstream 45018 60543140 ~ 60544139 (+) False XLOC_025874
TCONS_00052842 lncRNA upstream 45018 60543274 ~ 60544139 (+) False XLOC_025874
TCONS_00052843 lncRNA upstream 45018 60543275 ~ 60544139 (+) False XLOC_025874
TCONS_00052845 lncRNA upstream 45018 60543276 ~ 60544139 (+) False XLOC_025874
TCONS_00050743 lncRNA downstream 53757 60646736 ~ 60647950 (+) False XLOC_025877
TCONS_00050744 lncRNA downstream 54494 60647473 ~ 60648234 (+) True XLOC_025877
TCONS_00052846 lncRNA downstream 84255 60677234 ~ 60684970 (+) True XLOC_025878
TCONS_00052847 lncRNA downstream 204444 60797423 ~ 60798872 (+) True XLOC_025881
TCONS_00052848 lncRNA downstream 268268 60861247 ~ 60862752 (+) True XLOC_025883
TCONS_00050740 mRNA upstream 306775 60277300 ~ 60282382 (+) True XLOC_025857
TCONS_00050724 mRNA upstream 306919 59411956 ~ 60282238 (+) False XLOC_025857
TCONS_00050739 mRNA upstream 363130 60177774 ~ 60226027 (+) True XLOC_025869
TCONS_00050735 mRNA upstream 485219 60034194 ~ 60103938 (+) False XLOC_025864
TCONS_00050737 mRNA upstream 514552 60044780 ~ 60074605 (+) True XLOC_025866
TCONS_00050742 mRNA downstream 14262 60607241 ~ 60624039 (+) True XLOC_025876
TCONS_00050745 mRNA downstream 123925 60716904 ~ 60733722 (+) False XLOC_025879
TCONS_00050746 mRNA downstream 128363 60721342 ~ 60733722 (+) True XLOC_025879
TCONS_00050747 mRNA downstream 168832 60761811 ~ 60795831 (+) True XLOC_025880
TCONS_00050748 mRNA downstream 235834 60828813 ~ 60841194 (+) True XLOC_025882
TCONS_00050717 other upstream 1878402 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 2418743 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 2590598 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 2759238 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 2949709 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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