RNA id: TCONS_00050745


Basic Information

Item Value
RNA id TCONS_00050745
length 4231
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_025879
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60716904 ~ 60733722 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGTCGCCGGGGTGACCGGACAAACGTCCTGCGGCAGGTATTAAACGGGGCCCGGAGCCTCTGCTGCCCCGGAGACCTTAAACCGAGTCCCGTAGACGAGCAGACACTCCACCGCTGGAAGAAAACGGATAACATTTCTCATTTTCCCCTCAGAAAACCGTTGGATGTTATTTCCCTGCCATTCAAGACCGCTATCGAGGAAGGACAGGATTTGTCAGGACCATGCTCTCCATGAGTTCCATGGACCCCTGGCCGGAGGGCTCGGTGGGCTTGGAGGAGGAAGTGGTGACTGCAGCGGCTCAGGCCGAGCGTTTGGACACCTCCACACCGCTCCAGTGCAACACCAGTTTAGACTCCGACAATTTAGACGACAGCCTGACCAGCCTCCAGTGGCTGCAGGAGTTCTCCATCCTCAACGCCAGCACAGGACAGCACACGTCCCCGTCTAGCCACAGCCACCTCATGGGCTCAGACGCGCCCTCTTCACCGTTAGCAGGAGACCCGGCGTCTATAGGCATGCCACTGACCCCTGGGAAACCCACGGCGGCGTCTTTCTGCAGAGTGCCCATGTTTTCAGCTCTGCCCAGCCTGGTGGCGCATGGACACTGTCCCGACGAAGTCGATTATAAGTCCAACCCGCACATCAAGCCGCCATACTCATATGCAACTCTCATATGCATGGCTATGCAGGCAAGCAAGAAAACCAAAATCACACTTTCATGCATCTACAAGTGGATCACGGACAACTTCTGCTACTTCCGCCACGCAGATCCCACCTGGCAGAACTCCATCCGCCACAATCTGTCCCTGAACAAATGCTTCATAAAAGTCCCAAGGCAGAAGGATGAACCGGGCAAAGGCGGCTTCTGGAAAATCGACCCGCAGTACGCCGAACGTCTCTTAAACGGAGCCTACAAGAAGCGCAGATTACCTCCAGTGCAGATCAATCCAGCTCTCCAGCACCGACTCAGGATGAACGCTCAAGCTACAGGAGTAATATCCCGAAACCTGAGCGTGAGTCCCGAATCCCAGCAGCTCCTGAAGGACTTCGAGGAGGCCACCAGCGCAGACCAGAACTGGGACCCGCGATTGGCTGAAGCCACAATGTTGAGTTGCTGGATCTCCGGGAAGGGAACCAACAAACGAAAACAGCCGTATAACCACAGGACTGGAAAAACTCCTCGACGCTCAAGCTCTCCTCTTCTGGTCATGGATGAACAGGAGGATTTGAGCTCCCTGAGGGGCAACTTTGACTGGGACGCTCTACTGGATTCAGCCCTGAATGGAGAATTAAGCTTGAATGAAGGAAGCCCATTAAGTCCAACGCCTCAAGACGAAGAGTTGATGATTAGAGGAACGCATATAAGTCCTCAAGAAGCTCCCGTTGAGAATCACGTCTTGATGGAAACCCAAAGGAGCGGCGATGAGGACTTTGACGAGGAAACTTTTTTGGCTACGGCGTTTTTGCAGAGCCCCTGGTCAGAGGTGGACGAATCCAACCGTTCCGACTTCCTCGGCAGCTCCACCGTAAGCATCGATCAACTCTTCGATCTCTCTTTCGGAGGGGATTTAAGCAGTAAAATCGAGACTCTGCTTTGAAGAGGGTTACATTTTGGTCCTTTGAGTCAAAGAACTGTGAGGGTTTGGATTGTTTTTACCCCCCCACcccacctaaaaaaaaaagatgaattgtGGATTCCATGAACTCCACACGAAgatgtatttttaaaagtgtatctATTTCTTATATTGATTTTTAtgattgtgtttttttgtatCTGATATATTATCTACCTGCATTGAAGTTAATCCAATCAAGATCCTTAGCATTGCTTTCGGGAAGATCTGATTCGCTGGTTGAGCGCCAATCCTGCGCGAACTTACGGAGAGATGCGAGCTTATTGTTTACAATTCAAACTTACACGCAAGTACAAGAGATTCATTGAAGAAGGGAACAATCTCGACATCTTGTGAACCAAAATCTGCTTTTCCACATGGTACGGTTTAGCACTCGGATTTTTCTTCGCTTAGTTTGTGTTTCCACAGTTTAGTACTTCTTTAAGTGGGCGAGATTATCGATGTAGTTGCGCCGCCTTTGCTACTATGGCATCATCGCGAACAAGCATGAGATAAACAAATGCGCTACACAAACAAAGGCAATTGATACTGATGCAAAATTGTTCTTGAGCAGCTGACTATTTAAATATTGGTCTCTATTAGTGTTGTCTTTaacacgatactggaattcggtaccagtTGGTACTAAAATTAATACACGTCCAATTCCCGCTAACATTCGAGCTTGTTCTTAAACAGCTCTGATTAACCATTGTGTTCctatgctcaacagaaatgactgtgattggctgtgaaggtcatcagttcgcccaactcaccgctgtttactgagtgtaaccacagatgcagggacactggagcattttaaagccgcgaTTTATTAGCGAATCGCTTGTATTTCAGCTTATAggcaaaccagctgatcgacgcagctttaaaatgctccagtgttgtTGGTGCCCATGCAACTGGGAAAATGGTGCAAATTTAGTTCTCTGAAGGACCGTCTTGTTGACTAGCTGGTGCGAAAGCCCTTCATGGCATCATTTTGAAACATCCTATTGGATAAGAGTGGACTAAATGCTGTTTATAGCAGTTGTTCTCAGGACGTCCCACCTGATTTAGTGGAGCCTCTTAAAATCGCCCACACGAACACGGGTATTTTCAAAACCGCCATATTTTTGACTGACTCCAGCCAGGATTTTCAGAAACTCCGGGTGCAGTGTGGATGTGTCCACTAAAACTCGAATTTTTGCCTGATGACATCAGTGTGCATGCTgcattctgattggccaacatggcTTTGCTCATGCTGGGTTCATGAATCAATGGGTTCAATGCGATTGAGAGGAATTCTGAGCATTCACAATGGTAATTATTTGGTAATCAATGGGAATAATTGCCTTTGTTGGCACATTTGCATTGAATTTCATGTAAATTACTCATGCAAATGCTTAATCCATCATAAAAGGCTTTTCATCGCCACCTGTTGGTTCGCACTGGCATcacattttcatgtttttaatttttttttattagggaGGGGAAAATACCCGTGTACATGTGAACATGGCCTGAGATGTCCGTAATGTGCAGTGCTACAATCATCCAACACTGCGATTGAAATAAATTGGTTCAGGGTGCGATTCACAACCAtttactaaaatttaaaataataccttttaaaaACGTAACTCTCCCAAAACCCATTTGTTGTGTAAATGAATGACCAAAAACACTCAAGTTTTCCATTTGTGGCTGAAAATGTTGTAGCGTAAAGCTACCTTGTGCATCTTTTGGTTGAAACTTGAGTTTTTAGGCTTATAAACATGAACTGTTACTGCTGAACGGCGGAGATGATGGACACTGTATATTGATAGTCAAACTGCACTAATCGAAAGCATGCTATATGCTTGTGTTGGGTTATTTCGGTAGGTTAAATTGTATGTGCCAAACTTTATTGCAGCTCAGTTTTAGATCGGATAGGTTTAAAAATCTAACCTTCTTCATGCACATTGTGTTATGAGTGTTACGCTGACGTCATGCAACTGATCTTTTACATCAAGACTACTTTTATCTTCTTATGTAGATTGTTAGTAGCAAGTGAGTTTAAAAGGgattagttaatcatttggaagaCATGTCTTTAGAGTAAATAATAAACATGCACTAATATACCAAAccttttgctttgtttgtttgattgcttgcttgtttgtttgttggtttgctAATTTTGGAAATACATTCAAGAGTCTGAAATGAGAAATAATTTAAAGTGACCCCATCGCCATTGTTAAAGTAATTTGTAACATGTTTTAACGGATTTTACATTGTTAAAAGTGAGTAGATGCTCAAATataatgcttttaaaatgataagtaatttaaaagtaagtagtcgactaatcgctttaaaagcaacaggtttaatcactttattaagtaaagtcgactaatcgctttaaaagcaactgatttactcactttataaagtaaagtcgactaatcgctttaaaagcaacaggtttactcacttttataaagtaaagtcgactaatcgctttaaaagcaacaggtttactcacttttataaagtaaagtcgactaatcgctttaaaagcaacaggtttactcacttttataaagtaaa

Function

GO:

id name namespace
GO:0003351 epithelial cilium movement involved in extracellular fluid movement biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003146 heart jogging biological_process
GO:0009611 response to wounding biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0060296 regulation of cilium beat frequency involved in ciliary motility biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1178 Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including cerebrospinal fluid circulation; embryonic heart tube morphogenesis; and regulation of cilium beat frequency involved in ciliary motility. Predicted to be active in nucleus. Is expressed in several structures, including mesoderm; nervous system; neural tube; renal system; and tail bud. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 43. Orthologous to human FOXJ1 (forkhead box J1).

Ensembl:

ensembl_id ENSDART00000168280

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052846 lncRNA upstream 31934 60677234 ~ 60684970 (+) True XLOC_025878
TCONS_00050744 lncRNA upstream 68670 60647473 ~ 60648234 (+) True XLOC_025877
TCONS_00050743 lncRNA upstream 68954 60646736 ~ 60647950 (+) False XLOC_025877
TCONS_00052841 lncRNA upstream 172765 60543140 ~ 60544139 (+) False XLOC_025874
TCONS_00052847 lncRNA downstream 63701 60797423 ~ 60798872 (+) True XLOC_025881
TCONS_00052848 lncRNA downstream 127525 60861247 ~ 60862752 (+) True XLOC_025883
TCONS_00050751 lncRNA downstream 296621 61030343 ~ 61033495 (+) True XLOC_025884
TCONS_00052849 lncRNA downstream 305351 61039073 ~ 61041115 (+) True XLOC_025885
TCONS_00052850 lncRNA downstream 604817 61338539 ~ 61352006 (+) True XLOC_025888
TCONS_00050742 mRNA upstream 92865 60607241 ~ 60624039 (+) True XLOC_025876
TCONS_00050741 mRNA upstream 123925 60589157 ~ 60592979 (+) True XLOC_025875
TCONS_00050740 mRNA upstream 434522 60277300 ~ 60282382 (+) True XLOC_025857
TCONS_00050739 mRNA upstream 490877 60177774 ~ 60226027 (+) True XLOC_025869
TCONS_00050737 mRNA upstream 642299 60044780 ~ 60074605 (+) True XLOC_025866
TCONS_00050747 mRNA downstream 28089 60761811 ~ 60795831 (+) True XLOC_025880
TCONS_00050748 mRNA downstream 95091 60828813 ~ 60841194 (+) True XLOC_025882
TCONS_00050749 mRNA downstream 223790 60957512 ~ 61034549 (+) False XLOC_025884
TCONS_00050750 mRNA downstream 228688 60962410 ~ 61034294 (+) False XLOC_025884
TCONS_00050752 mRNA downstream 451938 61185660 ~ 61187105 (+) True XLOC_025886
TCONS_00050717 other upstream 2006149 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 2546490 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 2718345 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 2886985 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 3077456 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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