RNA id: TCONS_00050751


Basic Information

Item Value
RNA id TCONS_00050751
length 938
lncRNA type retained_intron
GC content 0.60
exon number 2
gene id XLOC_025884
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60957512 ~ 61034549 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCTTCGGGGAAGAGAGCTTGGACTCGCTGTTGGGCGACACTTtaggtttgtgtgtgtatatagattCTTTCCTTAGTCCTTGATAACAATGAACGCTGAAAGTCATCCTAATTGGTGAACTTGGAGCGCAGTACGCCTCCTCCCGGGCTTCcttttaattttgttaggaaaaaatgtcatgtttaagggatcgttcacccaaaaatgaaaagtctgatGGTGAACAGATCTTGTTGTcttctgtgttgttttgtgtgtcaGATGGTCAGGCGTCGTCGGGAATGGATGCTCTTCAGCATCAGCAGCAGGCTCGTGTGGGTCAGTGGGGGGAACACACACCCTTCCTGCCGGCCGGTGTCGCCCCCTTCCCTCTGCCACAGCAGTTGGCTCATCTGGCACAACCTGGACTGCGCATCCCTCCGCAGATCCTGAGAGCCGGATGGGGCCTGGGGCCAGCAGCAGACGAGGAGCCCAGACCCACCATGCCCAGGTATCCGGGTCTGCTCCGTGAGATGCTCCCGCAGGATCAGCAGTATGAGCAGCGGGACCCTGCAGAAATGCCTCCTCCTCAGTCTCGTCTCCTTCAGTACCGTCAGCAGATCCAGCCCCGGAGCCCTGGAGACCTGCCGTCCCCCTCATCCTCAGCCCCAAACCACAACTTCCCGGCCCCAGCCCAGCCCTCGTACCCCGACACCAGCCGAGAGCCGCCTGTGGGCTTCAGTCAGGCCCCGTTCCCGCCGGATCACAGCGCGGGGCCACTTCCAGTCAAGTACCTGCTCCAGGAGGCCCACTGGCCCCATCCCGGACACATGCTGGGCCACGGGTTGCCCTTCGGCCTACAGGCGATGGCACAGCGGCAGGATCCAGGGCCGCTGCAGCACCAGCAGCAGAAACAGCAGCTCCAGGCCCCGCAGAGCTCCCTGCACAGCCTAGATG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035194 post-transcriptional gene silencing by RNA biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-2419 Predicted to enable RNA binding activity. Predicted to be involved in post-transcriptional gene silencing by RNA. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in P granule and cytosol. Orthologous to human HELZ (helicase with zinc finger).

Ensembl:

ensembl_id ENSDART00000154211

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052848 lncRNA upstream 167591 60861247 ~ 60862752 (+) True XLOC_025883
TCONS_00052847 lncRNA upstream 231471 60797423 ~ 60798872 (+) True XLOC_025881
TCONS_00052846 lncRNA upstream 345373 60677234 ~ 60684970 (+) True XLOC_025878
TCONS_00050744 lncRNA upstream 382109 60647473 ~ 60648234 (+) True XLOC_025877
TCONS_00050743 lncRNA upstream 382393 60646736 ~ 60647950 (+) False XLOC_025877
TCONS_00052849 lncRNA downstream 5578 61039073 ~ 61041115 (+) True XLOC_025885
TCONS_00052850 lncRNA downstream 305044 61338539 ~ 61352006 (+) True XLOC_025888
TCONS_00052851 lncRNA downstream 307198 61340693 ~ 61343708 (+) True XLOC_025889
TCONS_00052852 lncRNA downstream 323710 61357205 ~ 61360319 (+) False XLOC_025890
TCONS_00052853 lncRNA downstream 324312 61357807 ~ 61384192 (+) False XLOC_025890
TCONS_00050748 mRNA upstream 189149 60828813 ~ 60841194 (+) True XLOC_025882
TCONS_00050747 mRNA upstream 234512 60761811 ~ 60795831 (+) True XLOC_025880
TCONS_00050745 mRNA upstream 296621 60716904 ~ 60733722 (+) False XLOC_025879
TCONS_00050746 mRNA upstream 296621 60721342 ~ 60733722 (+) True XLOC_025879
TCONS_00050742 mRNA upstream 406304 60607241 ~ 60624039 (+) True XLOC_025876
TCONS_00050752 mRNA downstream 152165 61185660 ~ 61187105 (+) True XLOC_025886
TCONS_00050753 mRNA downstream 187699 61221194 ~ 61288774 (+) True XLOC_025887
TCONS_00050754 mRNA downstream 358141 61391636 ~ 61398938 (+) True XLOC_025892
TCONS_00050755 mRNA downstream 386584 61420079 ~ 61421085 (+) True XLOC_025893
TCONS_00050756 mRNA downstream 489264 61522759 ~ 61524436 (+) False XLOC_025894
TCONS_00050717 other upstream 2319588 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 2859929 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 3031784 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 3200424 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 3390895 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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