RNA id: TCONS_00052851


Basic Information

Item Value
RNA id TCONS_00052851
length 2932
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_025889
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 61340693 ~ 61343708 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATTTAGTTACTAATAATTCTCTCGAGTTTGTGTTAGCTaacttttaaaaagctgtttccATTTCTAAACATGTAATCAGCGCATAAAACCTCAAAACACAAAGTTCCACTACTACTGAAACGAAGAATAAAGTTCAATTTCTACAATTTCTTTGCTGTTTCGACAGGAACGCTCAAGGGATCTTGTTAACAGGTGATTCGTCAGTCCAAGTTCTCAGTTAACCACAAAGAAGAAAGTTGAGACAGTCCACAATCCAAGAAGGGGTCACACTTCACTCATTTCACATTCTAGAGCTAAACATTCAGCAACTGACACCAACAGAACATCACATGAATAAAACTACAGATGTGTATGACAATTTCACTCTCGTATACACTCTCATAGTTTTCACTTGTGGCTCGTTTCCACAGACTGGTACAGTGCTGTTCGGTTCGGTACATGTCTCCTTTATCAGGCTTCTGTTTCCACTATCAAGGGTACACTTTTGGTGGTGTACGACagagtttcagtcgacgtcattttcgctcgaataaatgtctacagcaaagctgtacaggtcgttcacaaatcatatgagaagcacttctcacaaaacagacgctttatacacataaatactcgtttgtaaatgtttattactagcCTTTCTATGAATCATCTTAACAATAACATTGAAACAAGAGATAAGGAAATACCTATTTTCATATAGGTATTAGCAACTTAAACAAATATTGTTGAGGCATCGTACAGCAGCATATTTagatgaccgtcatcttcactgtttacatcaaaacggagcctataacatcactgcctcctttcattttcttcgAAAAATACAAAGcatatcctgttttttttttgctgaatatcagttttaataattggTGATGGCCATTCCAAAAGTATAGCATACAATAAGTACATacaataaaggcaagcaatcagtcaaaagagcagaatcagtgtacacggttacataaattaatgtaTTAACCTTTCTTTGTGCGCAGTCAAAatacgttacctgagaacaagtaatagattcaatgGACCAAAGAGTCGTCAGATAAAGACTAGATGAATTATGGCTCGCttacactgagtggtacggttcggtacactttcatacacacacaaaaaaggagaagccggaaaaaactaAAGAGCAAATGTTTTATTCAGCAACCTATAAGATGAAGGAACTGCCACTATTATCATAGCCTTTAGGACTATTATGAAGTctgaatgacggaattactttcaaACAGAAGCTACATGCGAtactgaagattacagacacacaTGAGAGCTTTGCACTGACTGTGAGCTGTAGCGTGCTTttaaacccaaataaggactaaatgtgtACTGTCTGCACCACATCCACCAAAAGGATAACATTAGTACCCTATTGCCAGTGGGAAGGCAAGCCTGATACAGGTCACCTATAGCCTACCATACTGTGCCACTCAGTGTAAACGAGCCATTAAATGTCATGTTTAACATCTAGTTAGATGAAATCCAGCGAAAGATCCTTGGTGAACTGTCTGACCTGCGCACagagcacccgctgactgcctggagctttGCAGCGagtgccagagtgtgtgtgtgtgtggtcacgtgatgtgcggtttcagcggtgtagtgtggattttcatgtggTTTTTAAGCTGCACTGAGTATTtgaaactctgtagacactgatcgCATGCATTTGGTTTGCCTCAAGTGTGAATCCTCTTATGCGATTTCAGCTGATCTGGTCgtctgaatctcttgtcgcagtgtaaACACgcgtaaggtttctctccagtgtgaatcctctcatgttcTTTCAGTTTTTCTGGTCGTCtaaatctcttgtcgcagtgtgaacaggtgtacggtttctctccagtgtgtataCTCTCATGTGATTTCAGCTGATTTGGTTgtctgaatctcttgtcgcagtgtgaacaggtgtacggtttctctccagtgtgaatcctctcatgtgattTCAGTTGTTCTGATcgactgaatctcttgtcgcagtgtgaacacgaatgaggtttctctccagtgtgaatcatttcATGTGCTTTCAGATGTTTTGGTTgtctgaatctcttgtcgcagtgtgaacaggtgtacggcttctctccagtgtgaatcctctcatgttcTTTCAGATGTTCTGATCGACTAAATtccttgtcgcagtgtgaacacgaataaggtttctctccagtgtgaatcctctcatgtgattTCAGTTGTGcagctgaaataaaagtcttctcgCACTCAAAGCACAgatactctctcacaccagtgtggatcttctgatgggTTATCAAACGtgtatgcactgtaaaacccttTTTACACACAGAACATGAATAGGGTTTCTCATTACTATGACCTCTAACGTGGACCTTGAGGTCTTTAACCCTCagaaatgttttgctgcattgatCACACTTGTGTGTTTTCTCACCATTGTGGATCAACATGTGTTCGTTAAGGGATGAcgataggctgaaactcttcccacactcagtacatgtgaatggtttctctccagtgtggatcctcatgtgtttattaagggttGATGTTAGGCTGAAACTagttccacactgagtgcatgtgaatggtctctcgccggtgtggatcatcatgtgtctaTTAAGGTGTGGCAattgtctgaaactcttcccacactcgctacatgtgaacggtttctctccggtgtggatcctcatgtgaatcttaagaataTGTTTGCTTCCCAAACTCTTTTCACAATAAGTGCAGGTCAGTCGATTgctgtctctccttttcaaaacacCAGAGGtctgtaaattacattttttcccaGCTTCAACAGCACATTCCTCCTCTTCACTCTTCTCATCTTCTTCAAATAggtctgaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052849 lncRNA upstream 299578 61039073 ~ 61041115 (+) True XLOC_025885
TCONS_00050751 lncRNA upstream 307198 61030343 ~ 61033495 (+) True XLOC_025884
TCONS_00052848 lncRNA upstream 477941 60861247 ~ 60862752 (+) True XLOC_025883
TCONS_00052847 lncRNA upstream 541821 60797423 ~ 60798872 (+) True XLOC_025881
TCONS_00052846 lncRNA upstream 655723 60677234 ~ 60684970 (+) True XLOC_025878
TCONS_00052852 lncRNA downstream 13497 61357205 ~ 61360319 (+) False XLOC_025890
TCONS_00052853 lncRNA downstream 14099 61357807 ~ 61384192 (+) False XLOC_025890
TCONS_00052854 lncRNA downstream 20295 61364003 ~ 61384192 (+) False XLOC_025890
TCONS_00052855 lncRNA downstream 20426 61364134 ~ 61373422 (+) False XLOC_025890
TCONS_00052856 lncRNA downstream 20776 61364484 ~ 61384192 (+) False XLOC_025890
TCONS_00050753 mRNA upstream 51919 61221194 ~ 61288774 (+) True XLOC_025887
TCONS_00050752 mRNA upstream 153588 61185660 ~ 61187105 (+) True XLOC_025886
TCONS_00050749 mRNA upstream 306144 60957512 ~ 61034549 (+) False XLOC_025884
TCONS_00050750 mRNA upstream 306399 60962410 ~ 61034294 (+) False XLOC_025884
TCONS_00050748 mRNA upstream 499499 60828813 ~ 60841194 (+) True XLOC_025882
TCONS_00050754 mRNA downstream 47928 61391636 ~ 61398938 (+) True XLOC_025892
TCONS_00050755 mRNA downstream 76371 61420079 ~ 61421085 (+) True XLOC_025893
TCONS_00050756 mRNA downstream 179051 61522759 ~ 61524436 (+) False XLOC_025894
TCONS_00050757 mRNA downstream 179327 61523035 ~ 61533097 (+) False XLOC_025894
TCONS_00050758 mRNA downstream 187507 61531215 ~ 61533846 (+) False XLOC_025894
TCONS_00050717 other upstream 2629938 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 3170279 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 3342134 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 3510774 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 3701245 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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