Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050756 |
| length | 1383 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 2 |
| gene id | XLOC_025894 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 61522759 ~ 61533846 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080219-20 | Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000106266 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052856 | lncRNA | upstream | 138567 | 61364484 ~ 61384192 (+) | False | XLOC_025890 |
| TCONS_00052863 | lncRNA | downstream | 530258 | 62054694 ~ 62061838 (+) | False | XLOC_025898 |
| TCONS_00052865 | lncRNA | downstream | 530258 | 62054694 ~ 62061838 (+) | False | XLOC_025898 |
| TCONS_00052867 | lncRNA | downstream | 530258 | 62054694 ~ 62061838 (+) | False | XLOC_025898 |
| TCONS_00052868 | lncRNA | downstream | 530258 | 62054694 ~ 62061838 (+) | False | XLOC_025898 |
| TCONS_00052866 | lncRNA | downstream | 530258 | 62054694 ~ 62061838 (+) | False | XLOC_025898 |
| TCONS_00050755 | mRNA | upstream | 101674 | 61420079 ~ 61421085 (+) | True | XLOC_025893 |
| TCONS_00050754 | mRNA | upstream | 123821 | 61391636 ~ 61398938 (+) | True | XLOC_025892 |
| TCONS_00050753 | mRNA | upstream | 233985 | 61221194 ~ 61288774 (+) | True | XLOC_025887 |
| TCONS_00050752 | mRNA | upstream | 335654 | 61185660 ~ 61187105 (+) | True | XLOC_025886 |
| TCONS_00050749 | mRNA | upstream | 488210 | 60957512 ~ 61034549 (+) | False | XLOC_025884 |
| TCONS_00050758 | mRNA | downstream | 6779 | 61531215 ~ 61533846 (+) | False | XLOC_025894 |
| TCONS_00050759 | mRNA | downstream | 6891 | 61531327 ~ 61533185 (+) | True | XLOC_025894 |
| TCONS_00050760 | mRNA | downstream | 16091 | 61540527 ~ 61543750 (+) | False | XLOC_025895 |
| TCONS_00050761 | mRNA | downstream | 16374 | 61540810 ~ 61543489 (+) | True | XLOC_025895 |
| TCONS_00050763 | mRNA | downstream | 372078 | 61896514 ~ 61961833 (+) | False | XLOC_025896 |
| TCONS_00050717 | other | upstream | 2812004 | 58702320 ~ 58710755 (+) | True | XLOC_025845 |
| TCONS_00050699 | other | upstream | 3352345 | 58168523 ~ 58170414 (+) | False | XLOC_025821 |
| TCONS_00050692 | other | upstream | 3524200 | 57997990 ~ 57998559 (+) | False | XLOC_025817 |
| TCONS_00050688 | other | upstream | 3692840 | 57825939 ~ 57829919 (+) | True | XLOC_025812 |
| TCONS_00050682 | other | upstream | 3883311 | 57636374 ~ 57639448 (+) | False | XLOC_025808 |
