RNA id: TCONS_00050759


Basic Information

Item Value
RNA id TCONS_00050759
length 945
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_025894
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 61522759 ~ 61533846 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgagtgatccagaaccctgcagattTACACATAAAGACACTGAACAACAAATGGACCCAATTGATGGAGATGAGGAGACTGAAGAGGGTAATTATGTTAAAGCTGGGAAAATACCTAATTTGAAGACATGTGGTaggatccacaccggagagaaaccacacatgaagatccacactggagagaaaccattcatgtgtactcagtgtgggaagagtttcagtcgatcatcatcccttaatgaacacatgaggatccacactggagagaaaccgttcacttgcactcagtgtgggacgagtttcagccaattatcacaccttaatacacacatgaggatccacactggagagaaaccgttcacatgcactcagtgtgggacgagtttcagccaattatcacaccttaatacacacatgatgatccacactggagaaagaccattcacatgcactcagtgtgggacgAGTTTCAGAGACTCATCATCTCTTAGTAGACACATGTTGATCCACACCGGAAAGAAAACGCACAAATGTGATCAATGCAGCAAGACATTTTTGATGGCTTCACAGCTGAAGGTTCATCTTTCAGTTCATAGAAGCGAGAAGCCTTATTCATGTCCtgtgtgtgaaaagagttttACATTGGAGTGGATATTAAAAAggcatcagaagatccacactggtgtgagagagcaTCTGTGCTTTAAGTGTGTGAAGACCTTCATGTCAGCTGCACAACTGAAACagcatgagaggattcacactggagagaaaccgtacaagtgttcacactgcgacaagagatttaGACTGTCAGGAGCCCTGAAATCAcatgagatgattcacactggagagaaaccgtttaGGTGTTCACACTGTAATAAGAATTTCCagcagcttaagaaacacatgaacatccacactggagaaaagctgCACACATGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-122 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000172368

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052856 lncRNA upstream 147135 61364484 ~ 61384192 (+) False XLOC_025890
TCONS_00052863 lncRNA downstream 521509 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00052865 lncRNA downstream 521509 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00052867 lncRNA downstream 521509 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00052868 lncRNA downstream 521509 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00052866 lncRNA downstream 521509 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00050756 mRNA upstream 6891 61522759 ~ 61524436 (+) False XLOC_025894
TCONS_00050755 mRNA upstream 110242 61420079 ~ 61421085 (+) True XLOC_025893
TCONS_00050754 mRNA upstream 132389 61391636 ~ 61398938 (+) True XLOC_025892
TCONS_00050753 mRNA upstream 242553 61221194 ~ 61288774 (+) True XLOC_025887
TCONS_00050752 mRNA upstream 344222 61185660 ~ 61187105 (+) True XLOC_025886
TCONS_00050760 mRNA downstream 7342 61540527 ~ 61543750 (+) False XLOC_025895
TCONS_00050761 mRNA downstream 7625 61540810 ~ 61543489 (+) True XLOC_025895
TCONS_00050763 mRNA downstream 363329 61896514 ~ 61961833 (+) False XLOC_025896
TCONS_00050762 mRNA downstream 363329 61896514 ~ 61961833 (+) True XLOC_025896
TCONS_00050764 mRNA downstream 467637 62000822 ~ 62053314 (+) True XLOC_025897
TCONS_00050717 other upstream 2820572 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 3360913 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 3532768 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 3701408 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 3891879 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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