RNA id: XM_036958436.1


Basic Information

Item Value
RNA id XM_036958436.1
length 3011
RNA type mRNA
GC content 0.58
exon number 14
gene id LOC110509409
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64590607 ~ 64647805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagagaagggagagagagatcagaggagAACGGAGaaacaacagtgacagcaccATCAAGAAAAACAGAAGGTTTCTGTTGCAGCTCTGTAGAAGCCTGTGTCTGTACTCTGTCAATGGTATGGAGTGGTAGAGAGCACTGAACACACCACTGATTGActttaacccctgacctctgacctcttatCCCTGGGTGTGTTCGAGGGGATGCCCAGGGTAGTCCGGCGGAAGCGATGGCATCATGTGACCTCCCGTACTTCTGCCCTCGCTGCGGAGACGACAAGCGTTTCGACAGCGTACCTGCCCTCCGGTCCCACCTGGTCAGCCGACACACCTACGAGACCCTCCTGGTTCTGTCTCAGGCCCGGGCCAGGAGCTCCAGCCCAGGAACTCTGCTGCCACTCCTCCCCCACGCCGTGGCCCAGCCGAAGCACCCCGTCCTGGGttcggagagggagagactaccTTTCCCCCTGGCCTGCCTGGATCTAGCGtcctcctctgcctccacccACCTACTCATTGAGATGTTGACCAGGAGAGACCAGGGAGGAGGGTCATCTGGTCCTGGTAATTCTGCTGGTCCTGTagctacctcctcctctactgcACCTCCTCACAGCACCACGGCCCTGGTCCTGCCTGGCTGTAGGGGAGACAGCCTGCCTGATTTGGGGCTGAGAGGCCTAGACCGCCGGTGGCTGGGGCCAAGCCTGGGCCTGGAGTTTGGGCTCTGCCTGGACGAGAGCCTCACTCTGGGGCTGGGGATTGACGAGAGGCTGGGGGTGGAGAGGAGTATCGCCAGGACGTTTGccgaggtggaggagagggtgtcCCAGCATGTGGGCTGTCTGAGGGCGGAGCTAGAGCGTCGAGAGGCGGAGTTAGAGCATGAGAGGCGGGATGCGGCGCGgctggagagggagaatgaggagcTGGAGGACCAGGCTTCCCATCTCTCCCGGCAGGTGGCGGTCTCCGTGGAGATGATGGCCACTCTGAAAAGAGACCTGCAGGGGAAGGACCAGGAGCTGTGTCGCAAGCAGCAGGAGGTGTGTGATATTGAGCGGTTCCTGAcagccacagcagagagagaagcagaggccAAGCTTCAGCTGCAGACCTTCATAGAGGCTCTGCTGGAACGGGCCGACCGGGCAGAGAGAAAACTGCAGCTACTGGTGGCTACAGACAGACACGCCCACAACGATGACAGACACGCCCACAACGATGACAGACACACCCACAATGATGACAGGCACACCCACAACGATGACAGACACACCCACAATGATGACAGACACACCCACAATGATAATAGCCGTACATACAATAACGATAGTCACTCCCACAATGGGACCAATGGCCACAGGACCAATGGACACGCCCACAACGGGAGTGAAGACGACATCATCACAGGGTCAAAGTTAATTGGCTACAGGAGAAGCTACAGTGTATCTGGGTCACACAGACTAGGAGACCAGATCTATCACAACAACTATGGagCCCCCGCTGGTCGTATGCGGACGCTGTCCCTGGGTTCTGGGGGGTGGGACAGTGACTCGGTGGGGGGGTGGGCCACACCTCTGGAAGCCCGTTACTACCACGTTCCCTGCTCTActcgagagggaggagagaggagggacagggggTACAGGCGAACcccagaggggaggggagggtgggggcGGACCAGGTGGAGGGCGCCCCCCagcacagaggaagaggaggaagaggatgatgaagaggaggacacaTGGTCAGAGGCCTGGAGCACACCTGAGACTCAGAGACACGCCCACGTCAGGCTGGAACACTCACCTGGCTCAGGTGTGTCGTCCATACGATCCAGCCCGTGTCACCGTGGTTACATAGCATTGGGGGCGGGGACTCTGAGACTGAGGGCGGGGTTATTCTGTGTGTTTCCTTATTTGGATGTGCGGACGTTGCTGCTCGCCGCCGAGGTGTGCTCCGATTGGAGGTTTGTGGCACGACACCCAGCCGTCTGGACACGGGTGCGACTGGAGAACGCCAGAGTCTCCGCTAAGTTCCTAGTGACCATGTCCCAGTGGTGTACTCAGACTCATTCCCTGGTGCTCCAGAACCTCAGACCACGACTGCGGCATCGAGATGAACGCAGAGAAGACTACGACAAGACCACACGgggctgtctggagggaggtgTGGAGGCGTTGCTGAGGTCAGCGGGAGGCAGTCTAATGGTTCTCAGAGTGTCTCACTGTCCTCACATCCTGACTGACCGCTCCCTGTGGCTGGCCAGCTGCTACTGTAGgaacctacaacacctcacatacaggagTTCATCAGACCCCATGGGTCATGAAGTGGTGTGGGCTCTAGGAGCAGGCTGCAGAAACATGACATCCCTGCAGGTGGCGCCACTACACCCCTGTCAGCAGCCTACCCGCTTCAGTAACCGATGCCTGCAGACGATTGGCCGCTGTTGGCCACACCTCCGAGTGCTCAGTGTGGGCGGGGCTGGCTGTAGCATTCAGGGATTGTCCTTACTGGttcGTAGGTGTGTGGGTCTCCAGGTGTTGGAGTTGGAGCGTGTTACTGAGGTGGTCCAGGAGGGGGCAGCAGAGCTGTGTAGAGAAGGACTACAGAATCTAGAGACTCTACTACTCACCTCTACTCCTGTTACACCTGAAGCACTACTGCACTTTAACAGTGTATGTTGTAACCTCAGGTCCATCATAGTGCAGATTGGGATAGCTGACCACTTTGAGGAGCCAGACAGTCCTGAAGCTAAGAGACAGTACAATGAGATGGTCAATAAGTTACAGGCCCTAAAGAAGAGACCAGGTCTGTCTGAAGTGTTGCAGATCAAAGCTGATGTTTTCgtttgacctcttcctcctcttcgtcttctccctccatctcactgacctgtcagtcacacagccaaTCAGCGAGTCTGGAAGCGACCTCAACAACCAGTCAGACTTGTGACACATTTGCCAACCAATCGGAAGATACAGCATCCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2018460 lncRNA downstream 10563 64580497 ~ 64581193 (-) True G1761958
TU2018459 lncRNA downstream 12348 64578157 ~ 64579408 (-) True G1761957
TU2018432 lncRNA downstream 37236 64553972 ~ 64554520 (-) True G1761944
TU2018428 lncRNA downstream 38007 64547230 ~ 64553749 (-) True G1761942
TU2018431 lncRNA downstream 38764 64552227 ~ 64552992 (-) True G1761943
TU2018606 lncRNA upstream 12980 64660473 ~ 64662434 (-) True G1762051
TU2018596 lncRNA upstream 16218 64663711 ~ 64713957 (-) False LOC118942818
TU2018619 lncRNA upstream 32064 64679557 ~ 64681616 (-) True G1762063
TU2018590 lncRNA upstream 58214 64705707 ~ 64713957 (-) False LOC118942818
TU2018593 lncRNA upstream 58214 64705707 ~ 64713957 (-) False LOC118942818
XM_036956538.1 mRNA downstream 58386 64525897 ~ 64533370 (-) True LOC118942817
XM_036958428.1 mRNA downstream 73718 64483522 ~ 64518038 (-) True cnga1b
XM_036958424.1 mRNA downstream 110769 64384916 ~ 64480987 (-) False nfxl1
XM_036956539.1 mRNA upstream 66329 64713822 ~ 64723784 (-) False LOC118942818
XM_036958443.1 mRNA upstream 129073 64776566 ~ 64790358 (-) True LOC118942984
XM_036956541.1 mRNA upstream 275996 64923489 ~ 64930766 (-) True LOC118942819
TU2018239 other downstream 173704 64417310 ~ 64418052 (-) True G1761826
TU2018157 other downstream 368268 64220922 ~ 64223488 (-) True LOC110517683
TU2018154 other downstream 385251 64205377 ~ 64206505 (-) False LOC110517683
TU2018636 other upstream 101011 64748504 ~ 64749274 (-) True G1762080
TU2018643 other upstream 106214 64753707 ~ 64754499 (-) False G1762085
TU2018644 other upstream 106233 64753726 ~ 64754499 (-) True G1762085
TU2018734 other upstream 209015 64856508 ~ 64857185 (-) False G1762162

Expression Profile