RNA id: XM_036958438.1


Basic Information

Item Value
RNA id XM_036958438.1
length 3018
RNA type mRNA
GC content 0.58
exon number 13
gene id LOC110509409
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64590607 ~ 64647805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGACGTCAGCAGCAGCGGTTGGGGCTCTCGTGTCTCCGGGAGAAAGAGGATTGAATAAAGAGGGGAGGATGCGCAACTGACACTACAGtcggagagaacagagagatccaCTGCACTAGGCCGGTATGGAGTGGTAGAGAGCACTGAACACACCACTGATTGActttaacccctgacctctgacctcttatCCCTGGGTGTGTTCGAGGGGATGCCCAGGGTAGTCCGGCGGAAGCGATGGCATCATGTGACCTCCCGTACTTCTGCCCTCGCTGCGGAGACGACAAGCGTTTCGACAGCGTACCTGCCCTCCGGTCCCACCTGGTCAGCCGACACACCTACGAGACCCTCCTGGTTCTGTCTCAGGCCCGGGCCAGGAGCTCCAGCCCAGGAACTCTGCTGCCACTCCTCCCCCACGCCGTGGCCCAGCCGAAGCACCCCGTCCTGGGttcggagagggagagactaccTTTCCCCCTGGCCTGCCTGGATCTAGCGtcctcctctgcctccacccACCTACTCATTGAGATGTTGACCAGGAGAGACCAGGGAGGAGGGTCATCTGGTCCTGGTAATTCTGCTGGTCCTGTagctacctcctcctctactgcACCTCCTCACAGCACCACGGCCCTGGTCCTGCCTGGCTGTAGGGGAGACAGCCTGCCTGATTTGGGGCTGAGAGGCCTAGACCGCCGGTGGCTGGGGCCAAGCCTGGGCCTGGAGTTTGGGCTCTGCCTGGACGAGAGCCTCACTCTGGGGCTGGGGATTGACGAGAGGCTGGGGGTGGAGAGGAGTATCGCCAGGACGTTTGccgaggtggaggagagggtgtcCCAGCATGTGGGCTGTCTGAGGGCGGAGCTAGAGCGTCGAGAGGCGGAGTTAGAGCATGAGAGGCGGGATGCGGCGCGgctggagagggagaatgaggagcTGGAGGACCAGGCTTCCCATCTCTCCCGGCAGGTGGCGGTCTCCGTGGAGATGATGGCCACTCTGAAAAGAGACCTGCAGGGGAAGGACCAGGAGCTGTGTCGCAAGCAGCAGGAGGTGTGTGATATTGAGCGGTTCCTGAcagccacagcagagagagaagcagaggccAAGCTTCAGCTGCAGACCTTCATAGAGGCTCTGCTGGAACGGGCCGACCGGGCAGAGAGAAAACTGCAGCTACTGGTGGCTACAGACAGACACGCCCACAACGATGACAGACACGCCCACAACGATGACAGACACACCCACAATGATGACAGGCACACCCACAACGATGACAGACACACCCACAATGATGACAGACACACCCACAATGATAATAGCCGTACATACAATAACGATAGTCACTCCCACAATGGGACCAATGGCCACAGGACCAATGGACACGCCCACAACGGGAGTGAAGACGACATCATCACAGGGTCAAAGTTAATTGGCTACAGGAGAAGCTACAGTGTATCTGGGTCACACAGACTAGGAGACCAGATCTATCACAACAACTATGGagCCCCCGCTGGTCGTATGCGGACGCTGTCCCTGGGTTCTGGGGGGTGGGACAGTGACTCGGTGGGGGGGTGGGCCACACCTCTGGAAGCCCGTTACTACCACGTTCCCTGCTCTActcgagagggaggagagaggagggacagggggTACAGGCGAACcccagaggggaggggagggtgggggcGGACCAGGTGGAGGGCGCCCCCCagcacagaggaagaggaggaagaggatgatgaagaggaggacacaTGGTCAGAGGCCTGGAGCACACCTGAGACTCAGAGACACGCCCACGTCAGGCTGGAACACTCACCTGGCTCAGGTGTGTCGTCCATACGATCCAGCCCGTGTCACCGTGGTTACATAGCATTGGGGGCGGGGACTCTGAGACTGAGGGCGGGGTTATTCTGTGTGTTTCCTTATTTGGATGTGCGGACGTTGCTGCTCGCCGCCGAGGTGTGCTCCGATTGGAGGTTTGTGGCACGACACCCAGCCGTCTGGACACGGGTGCGACTGGAGAACGCCAGAGTCTCCGCTAAGTTCCTAGTGACCATGTCCCAGTGGTGTACTCAGACTCATTCCCTGGTGCTCCAGAACCTCAGACCACGACTGCGGCATCGAGATGAACGCAGAGAAGACTACGACAAGACCACACGgggctgtctggagggaggtgTGGAGGCGTTGCTGAGGTCAGCGGGAGGCAGTCTAATGGTTCTCAGAGTGTCTCACTGTCCTCACATCCTGACTGACCGCTCCCTGTGGCTGGCCAGCTGCTACTGTAGgaacctacaacacctcacatacaggagTTCATCAGACCCCATGGGTCATGAAGTGGTGTGGGCTCTAGGAGCAGGCTGCAGAAACATGACATCCCTGCAGGTGGCGCCACTACACCCCTGTCAGCAGCCTACCCGCTTCAGTAACCGATGCCTGCAGACGATTGGCCGCTGTTGGCCACACCTCCGAGTGCTCAGTGTGGGCGGGGCTGGCTGTAGCATTCAGGGATTGTCCTTACTGGttcGTAGGTGTGTGGGTCTCCAGGTGTTGGAGTTGGAGCGTGTTACTGAGGTGGTCCAGGAGGGGGCAGCAGAGCTGTGTAGAGAAGGACTACAGAATCTAGAGACTCTACTACTCACCTCTACTCCTGTTACACCTGAAGCACTACTGCACTTTAACAGTGTATGTTGTAACCTCAGGTCCATCATAGTGCAGATTGGGATAGCTGACCACTTTGAGGAGCCAGACAGTCCTGAAGCTAAGAGACAGTACAATGAGATGGTCAATAAGTTACAGGCCCTAAAGAAGAGACCAGGTCTGTCTGAAGTGTTGCAGATCAAAGCTGATGTTTTCgtttgacctcttcctcctcttcgtcttctccctccatctcactgacctgtcagtcacacagccaaTCAGCGAGTCTGGAAGCGACCTCAACAACCAGTCAGACTTGTGACACATTTGCCAACCAATCGGAAGATACAGCATCCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2018460 lncRNA downstream 10563 64580497 ~ 64581193 (-) True G1761958
TU2018459 lncRNA downstream 12348 64578157 ~ 64579408 (-) True G1761957
TU2018432 lncRNA downstream 37236 64553972 ~ 64554520 (-) True G1761944
TU2018428 lncRNA downstream 38007 64547230 ~ 64553749 (-) True G1761942
TU2018606 lncRNA upstream 12668 64660473 ~ 64662434 (-) True G1762051
TU2018596 lncRNA upstream 15906 64663711 ~ 64713957 (-) False LOC118942818
TU2018619 lncRNA upstream 31752 64679557 ~ 64681616 (-) True G1762063
TU2018590 lncRNA upstream 57902 64705707 ~ 64713957 (-) False LOC118942818
TU2018593 lncRNA upstream 57902 64705707 ~ 64713957 (-) False LOC118942818
XM_036956538.1 mRNA downstream 58386 64525897 ~ 64533370 (-) True LOC118942817
XM_036958428.1 mRNA downstream 73718 64483522 ~ 64518038 (-) True cnga1b
XM_036958425.1 mRNA downstream 110769 64388159 ~ 64480987 (-) False nfxl1
XM_036958426.1 mRNA downstream 110769 64388882 ~ 64480987 (-) True nfxl1
XM_036958427.1 mRNA downstream 203948 64386561 ~ 64387808 (-) True LOC118942981
XM_036956539.1 mRNA upstream 66017 64713822 ~ 64723784 (-) False LOC118942818
XM_036958443.1 mRNA upstream 128761 64776566 ~ 64790358 (-) True LOC118942984
XM_036956541.1 mRNA upstream 275684 64923489 ~ 64930766 (-) True LOC118942819
TU2018239 other downstream 173704 64417310 ~ 64418052 (-) True G1761826
TU2018157 other downstream 368268 64220922 ~ 64223488 (-) True LOC110517683
TU2018154 other downstream 385251 64205377 ~ 64206505 (-) False LOC110517683
TU2018636 other upstream 100699 64748504 ~ 64749274 (-) True G1762080
TU2018643 other upstream 105902 64753707 ~ 64754499 (-) False G1762085
TU2018644 other upstream 105921 64753726 ~ 64754499 (-) True G1762085
TU2018734 other upstream 208703 64856508 ~ 64857185 (-) False G1762162

Expression Profile