RNA id: XR_005038737.1


Basic Information

Item Value
RNA id XR_005038737.1
length 2872
RNA type mRNA
GC content 0.59
exon number 12
gene id LOC110509409
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64590607 ~ 64647805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGGGAGGATGCGCAACTGACACTACAGtcggagagaacagagagatccaCTGCACTAGGCCGGTAAAGACCAGTTTAACCATTTCTACAGGAGATAAGCTTAAAATACTGGGACACAGGTTTGGTGggaatgagaaggagagagagagagagagagagagagagcgagagagagatagagagagagagaggggagagaagggagagagagagagagagagagaagggagagagagatcagaggagaacggagagaagggagagagagatcagaggagAACGGAGGTATGGAGTGGTAGAGAGCACTGAACACACCACTGATTGActttaacccctgacctctgacctcttatCCCTGGGTGTGTTCGAGGGGATGCCCAGGGTAGTCCGGCGGAAGCGATGGCATCATGTGACCTCCCGTACTTCTGCCCTCGCTGCGGAGACGACAAGCGTTTCGACAGCGTACCTGCCCTCCGGTCCCACCTGGTCAGCCGACACACCTACGAGACCCTCCTGGTTCTGTCTCAGGCCCGGGCCAGGAGCTCCAGCCCAGGAACTCTGCTGCCACTCCTCCCCCACGCCGTGGCCCAGCCGAAGCACCCCGTCCTGGGttcggagagggagagactaccTTTCCCCCTGGCCTGCCTGGATCTAGCGtcctcctctgcctccacccACCTACTCATTGAGATGTTGACCAGGAGAGACCAGGGAGGAGGGTCATCTGGTCCTGGTAATTCTGCTGGTCCTGTagctacctcctcctctactgcACCTCCTCACAGCACCACGGCCCTGGTCCTGCCTGGCTGTAGGGGAGACAGCCTGCCTGATTTGGGGCTGAGAGGCCTAGACCGCCGGTGGCTGGGGCCAAGCCTGGGCCTGGAGTTTGGGCTCTGCCTGGACGAGAGCCTCACTCTGGGGCTGGGGATTGACGAGAGGCTGGGGGTGGAGAGGAGTATCGCCAGGACGTTTGccgaggtggaggagagggtgtcCCAGCATGTGGGCTGTCTGAGGGCGGAGCTAGAGCGTCGAGAGGCGGAGTTAGAGCATGAGAGGCGGGATGCGGCGCGgctggagagggagaatgaggagcTGGAGGACCAGGCTTCCCATCTCTCCCGGCAGGTGGCGGTCTCCGTGGAGATGATGGCCACTCTGAAAAGAGACCTGCAGGGGAAGGACCAGGAGCTGTGTCGCAAGCAGCAGGAGGTGTGTGATATTGAGCGGTTCCTGAcagccacagcagagagagaagcagaggccAAGCTTCAGCTGCAGACCTTCATAGAGGCTCTGCTGGAACGGGCCGACCGGGCAGAGAGAAAACTGCAGCTACTGGTGGCTACAGACAGACACGCCCACAACGATGACAGACACGCCCACAACGATGACAGACACACCCACAATGATGACAGGCACACCCACAACGATGACAGACACACCCACAATGATGACAGACACACCCACAATGATAATAGCCGTACATACAATAACGATAGTCACTCCCACAATGGGACCAATGGCCACAGGACCAATGGACACGCCCACAACGGGAGTGAAGACGACATCATCACAGGGTCAAAGTTAATTGGCTACAGGAGAAGCTACAGTGTATCTGGGTCACACAGACTAGGAGACCAGATCTATCACAACAACTATGGagCCCCCGCTGGTCGTATGCGGACGCTGTCCCTGGGTTCTGGGGGGTGGGACAGTGACTCGGTGGGGGGGTGGGCCACACCTCTGGAAGCCCGTTACTACCACGTTCCCTGCTCTActcgagagggaggagagaggagggacagggggTACAGGCGAACcccagaggggaggggagggtgggggcGGACCAGGTGGAGGGCGCCCCCCagcacagaggaagaggaggaagaggatgatgaagaggaggacacaTGGTCAGAGGCCTGGAGCACACCTGAGACTCAGAGACACGCCCACGTCAGGCTGGAACACTCACCTGGCTCAGGTGTGTCGTCCATACGATCCAGCCCGTGTCACCGTGGTTACATAGCATTGGGGGCGGGGACTCTGAGACTGAGGGCGGGGTTATTCTGTGTGTTTCCTTATTTGGATGTGCGGACGTTGCTGCTCGCCGCCGAGGTGTGCTCCGATTGGAGGTTTGTGGCACGACACCCAGCCGTCTGGACACGGGTGCGACTGGAGAACGCCAGAGTCTCCGCTAAGTTCCTAGTGACCATGTCCCAGTGGTGTACTCAGACTCATTCCCTGGTGCTCCAGAACCTCAGACCACGACTGCGGCATCGAGATGAACGCAGAGAAGACTACGACAAGACCACACGgggctgtctggagggaggtgTGGAGGCGTTGCTGAGGTCAGCGGGAGGCAGTCTAATGGTTCTCAGAGTGTCTCACTGTCCTCACATCCTGACTGACCGCTCCCTGTGGCTGGCCAGCTGCTACTGTAGgaacctacaacacctcacatacaggagTTCATCAGACCCCATGGGTCATGAAGTGGTGTGGGCTCTAGGAGCAGGCTGCAGAAACATGACATCCCTGCAGGTGGCGCCACTACACCCCTGgCCCCAGTCCCCACCGGAGGCCTTTTGccatttgTCAGCAGCCTACCCGCTTCAGTAACCGATGCCTGCAGACGATTGGCCGCTGTTGGCCACACCTCCGAGTGCTCAGTGTGGGCGGGGCTGGCTGTAGCATTCAGGGATTGTCCTTACTGGttcGTAGGTGTGTGGGTCTCCAGGTGTTGGAGTTGGAGCGTGTTACTGAGGTGGTCCAGGAGGGGGCAGCAGAGCTGTGTAGAGAAGGACTACAGAATCTAGAGACTCTACTACTCACCTCTACTCCTGTTACACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2018460 lncRNA downstream 13436 64580497 ~ 64581193 (-) True G1761958
TU2018459 lncRNA downstream 15221 64578157 ~ 64579408 (-) True G1761957
TU2018432 lncRNA downstream 40109 64553972 ~ 64554520 (-) True G1761944
TU2018428 lncRNA downstream 40880 64547230 ~ 64553749 (-) True G1761942
TU2018606 lncRNA upstream 12729 64660473 ~ 64662434 (-) True G1762051
TU2018596 lncRNA upstream 15967 64663711 ~ 64713957 (-) False LOC118942818
TU2018619 lncRNA upstream 31813 64679557 ~ 64681616 (-) True G1762063
TU2018590 lncRNA upstream 57963 64705707 ~ 64713957 (-) False LOC118942818
TU2018593 lncRNA upstream 57963 64705707 ~ 64713957 (-) False LOC118942818
XM_036956538.1 mRNA downstream 61259 64525897 ~ 64533370 (-) True LOC118942817
XM_036958428.1 mRNA downstream 76591 64483522 ~ 64518038 (-) True cnga1b
XM_036958425.1 mRNA downstream 113642 64388159 ~ 64480987 (-) False nfxl1
XM_036958426.1 mRNA downstream 113642 64388882 ~ 64480987 (-) True nfxl1
XM_036958427.1 mRNA downstream 206821 64386561 ~ 64387808 (-) True LOC118942981
XM_036956539.1 mRNA upstream 66078 64713822 ~ 64723784 (-) False LOC118942818
XM_036958443.1 mRNA upstream 128822 64776566 ~ 64790358 (-) True LOC118942984
XM_036956541.1 mRNA upstream 275745 64923489 ~ 64930766 (-) True LOC118942819
TU2018239 other downstream 176577 64417310 ~ 64418052 (-) True G1761826
TU2018157 other downstream 371141 64220922 ~ 64223488 (-) True LOC110517683
TU2018154 other downstream 388124 64205377 ~ 64206505 (-) False LOC110517683
TU2018636 other upstream 100760 64748504 ~ 64749274 (-) True G1762080
TU2018643 other upstream 105963 64753707 ~ 64754499 (-) False G1762085
TU2018644 other upstream 105982 64753726 ~ 64754499 (-) True G1762085
TU2018734 other upstream 208764 64856508 ~ 64857185 (-) False G1762162

Expression Profile