RNA id: TU2018435


Basic Information

Item Value
RNA id TU2018435
length 1884
lncRNA type sense_over
GC content 0.41
exon number 5
gene id LOC110509409
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64590607 ~ 64647805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtattagtagtagtagatatAGGAGTgttagtatagttgtagtagtagataTAGTAGTGTTAGTATAGTTGTAGCAGTGTatttgtagtattgtagtagtagtattagtagtagtagatatAGGAGTGTTAGTATAATTATAGCAGTGCATTTGGAGTATTGTAGTAATAGTAGCAATAGtttagttgttgttgtgttgttgtcattgtTGTTGTGTTTACCGGCCTGTTAATTTCCTTCCACAGTCAGCAGCCTACCCGCTTCAGTAACCGATGCCTGCAGACGATTGGCCGCTGTTGGCCACACCTCCGAGTGCTCAGTGTGGGCGGGGCTGGCTGTAGCATTCAGGGATTGTCCTTACTGGttcGTAGGTGTGTGGGTCTCCAGGTGTTGGAGTTGGAGCGTGTTACTGAGGTGGTCCAGGAGGGGGCAGCAGAGCTGTGTAGAGAAGGACTACAGAATCTAGAGACTCTACTACTCACCTCTACTCCTGTTACACCTGAAGCACTACTGCACTTTAACAGTGTATGTTGTAACCTCAGGTCCATCATAGTGCAGATTGGGATAGCTGACCACTTTGAGGAGCCAGACAGTCCTGAAGCTAAGAGACAGTACAATGAGATGGTCAATAAGTTACAGGCCCTAAAGAAGAGACCAGGTCTGTCTGAAGTGTTGCAGATCAAAGCTGATGTTTTCgtttgacctcttcctcctcttcgtcttctccctccatctcactgacctgtcagtcacacagccaaTCAGCGAGTCTGGAAGCGACCTCAACAACCAGTCAGACTTGTGACACATTTGCCAACCAATCGGAAGATACAGCATCCTGGAGAGAATAAGCAATCAGCCAATAGGAATCACACAGACATGAAGATGACACATGAGACGTTAGTTGTGAAGCTGCTGGGTTCAGAGATTCTTcaaacataacagcaacatactATATTACTGTGATGTAACAGAGACTTTACCCATGCAAcgcacagatagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacacacagacacacagacagacagacacacagctgttAGCTGTCTTAGGGGGTTAGCCTCTATAATGAACTGACCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTAGTCTCTCCTCTATAAAGAACTAGTCTCTCCTCTATAAAGAACTAGTCTCTCCTCTATAAAGAACTAGTCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGACCTCACTCCTCTTTAACCTCTGGAGTTAAAAAAGCGAAATAACTCAGTTATCTTTAAATTCACACTGCCCTTGCCTTTGAACTCAACTCTTTTGCCAGTTCACTTGAATAATTTGTGGTCCAAGTCCTCTTTGCAAATCCCATTGCTGTGTTTAGAAAGGAACCAAGATATTTTTCCAACATTCACTCAAAGCACTCTGGGTTTTTCCAAAGTGCAGGACAAGCCCTCCCATCAGAATGTGTTATCACACAGCTAGATATTTTGTACCTACttacattttggaagctaataGATTGGATTTAGTTTAAAAATGAGACATAATAATTGTAATCAGACGATActattaacatgtaaatattattaGTAAGATAATCAATAGCAGAATAATAACTGCAGATTAAATGATGCTGTAATTGAACTTTGTACAACCAATTTAggctactgcccctttaagagatACAGTATAATTGATTGTGAACCTCATGTTGTGATTCTACCAAATATGGTGTTGTATCCTCACACTATTCAAACCCAACAAACGAATAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2018460 lncRNA downstream 9414 64580497 ~ 64581193 (-) True G1761958
TU2018459 lncRNA downstream 11199 64578157 ~ 64579408 (-) True G1761957
TU2018432 lncRNA downstream 36087 64553972 ~ 64554520 (-) True G1761944
TU2018428 lncRNA downstream 36858 64547230 ~ 64553749 (-) True G1761942
TU2018431 lncRNA downstream 37615 64552227 ~ 64552992 (-) True G1761943
TU2018466 lncRNA upstream 15354 64613066 ~ 64613827 (-) True G1761963
TU2018480 lncRNA upstream 37223 64634935 ~ 64635371 (-) True G1761974
TU2018481 lncRNA upstream 37960 64635672 ~ 64637665 (-) True G1761975
TU2018482 lncRNA upstream 39541 64637253 ~ 64637960 (-) True G1761976
TU2018606 lncRNA upstream 62761 64660473 ~ 64662434 (-) True G1762051
XM_036956538.1 mRNA downstream 57237 64525897 ~ 64533370 (-) True LOC118942817
XM_036958428.1 mRNA downstream 72569 64483522 ~ 64518038 (-) True cnga1b
XM_036958425.1 mRNA downstream 109620 64388159 ~ 64480987 (-) False nfxl1
XM_036958426.1 mRNA downstream 109620 64388882 ~ 64480987 (-) True nfxl1
XM_036958427.1 mRNA downstream 202799 64386561 ~ 64387808 (-) True LOC118942981
XM_036956539.1 mRNA upstream 116110 64713822 ~ 64723784 (-) False LOC118942818
XM_036958443.1 mRNA upstream 178854 64776566 ~ 64790358 (-) True LOC118942984
XM_036956541.1 mRNA upstream 325777 64923489 ~ 64930766 (-) True LOC118942819
TU2018239 other downstream 172555 64417310 ~ 64418052 (-) True G1761826
TU2018157 other downstream 367119 64220922 ~ 64223488 (-) True LOC110517683
TU2018154 other downstream 384102 64205377 ~ 64206505 (-) False LOC110517683
TU2018442 other upstream 28933 64626645 ~ 64633733 (-) True LOC110509409
TU2018636 other upstream 150792 64748504 ~ 64749274 (-) True G1762080
TU2018643 other upstream 155995 64753707 ~ 64754499 (-) False G1762085
TU2018644 other upstream 156014 64753726 ~ 64754499 (-) True G1762085
TU2018734 other upstream 258796 64856508 ~ 64857185 (-) False G1762162

Expression Profile