RNA id: TU2018436


Basic Information

Item Value
RNA id TU2018436
length 2518
RNA type TUCP
GC content 0.48
exon number 10
gene id LOC110509409
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64590607 ~ 64647805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagggtgggggcGGACCAGGTGGAGGGCGCCCCCCagcacagaggaagaggaggaagaggatgatgaagaggaggacacaTGGTCAGAGGCCTGGAGCACACCTGAGACTCAGAGACACGCCCACGTCAGGCTGGAACACTCACCTGGCTCAGGTGTGTCGTCCATACGATCCAGCCCGTGTCACCGTGGTTACATAGCATTGGGGGCGGGGACTCTGAGACTGAGGGCGGGGTTATTCTGTGTGTTTCCTTATTTGGATGTGCGGACGTTGCTGCTCGCCGCCGAGGTGTGCTCCGATTGGAGGTTTGTGGCACGACACCCAGCCGTCTGGACACGGGTGCGACTGGAGAACGCCAGAGTCTCCGCTAAGTTCCTAGTGACCATGTCCCAGTGGTGTACTCAGACTCATTCCCTGGTGCTCCAGAACCTCAGACCACGACTGCGGCATCGAGATGAACGCAGAGAAGACTACGACAAGACCACACGgggctgtctggagggaggtgTGGAGGCGTTGCTGAGGTCAGCGGGAGGCAGTCTAATGGTTCTCAGAGTGTCTCACTGTCCTCACATCCTGACTGACCGCTCCCTGTGGCTGGCCAGCTGCTACTGTAGgaacctacaacacctcacatacaggagTTCATCAGACCCCATGGGTCATGAAGTGGTGTGGGCTCTAGGAGCAGGCTGCAGAAACATGACATCCCTGCAGGTGGCGCCACTACACCCCTGgCCCCAGTCCCCACCGGAGGCCTTTTGccatttgTCAGCAGCCTACCCGCTTCAGTAACCGATGCCTGCAGACGATTGGCCGCTGTTGGCCACACCTCCGAGTGCTCAGTGTGGGCGGGGCTGGCTGTAGCATTCAGGGATTGTCCTTACTGGttcGTAGGTGTGTGGGTCTCCAGGTGTTGGAGTTGGAGCGTGTTACTGAGGTGGTCCAGGAGGGGGCAGCAGAGCTGTGTAGAGAAGGACTACAGAATCTAGAGACTCTACTACTCACCTCTACTCCTGTTACACCTGAAGCACTACTGCACTTTAACAGTGTATGTTGTAACCTCAGGTCCATCATAGTGCAGATTGGGATAGCTGACCACTTTGAGGAGCCAGACAGTCCTGAAGCTAAGAGACAGTACAATGAGATGGTCAATAAGTTACAGGCCCTAAAGAAGAGACCAGGTCTGTCTGAAGTGTTGCAGATCAAAGCTGATGTTTTCgtttgacctcttcctcctcttcgtcttctccctccatctcactgacctgtcagtcacacagccaaTCAGCGAGTCTGGAAGCGACCTCAACAACCAGTCAGACTTGTGACACATTTGCCAACCAATCGGAAGATACAGCATCCTGGAGAGAATAAGCAATCAGCCAATAGGAATCACACAGACATGAAGATGACACATGAGACGTTAGTTGTGAAGCTGCTGGGTTCAGAGATTCTTcaaacataacagcaacatactATATTACTGTGATGTAACAGAGACTTTACCCATGCAAcgcacagatagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacacacagacacacagacagacagacacacagctgttAGCTGTCTTAGGGGGTTAGCCTCTATAATGAACTGACCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTAGTCTCTCCTCTATAAAGAACTAGTCTCTCCTCTATAAAGAACTAGTCTCTCCTCTATAAAGAACTAGTCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGACCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGGTCTCTCCTCTATAAAGAACTGACCTCACTCCTCTTTAACCTCTGGAGTTAAAAAAGCGAAATAACTCAGTTATCTTTAAATTCACACTGCCCTTGCCTTTGAACTCAACTCTTTTGCCAGTTCACTTGAATAATTTGTGGTCCAAGTCCTCTTTGCAAATCCCATTGCTGTGTTTAGAAAGGAACCAAGATATTTTTCCAACATTCACTCAAAGCACTCTGGGTTTTTCCAAAGTGCAGGACAAGCCCTCCCATCAGAATGTGTTATCACACAGCTAGATATTTTGTACCTACttacattttggaagctaataGATTGGATTTAGTTTAAAAATGAGACATAATAATTGTAATCAGACGATActattaacatgtaaatattattaGTAAGATAATCAATAGCAGAATAATAACTGCAGATTAAATGATGCTGTAATTGAACTTTGTACAACCAATTTAggctactgcccctttaagagatACAGTATAATTGATTGTGAACCTCATGTTGTGATTCTACCAAATATGGTGTTGTATCCTCACACTATTCAAACCCAACAAACGAATAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2018460 lncRNA downstream 9414 64580497 ~ 64581193 (-) True G1761958
TU2018459 lncRNA downstream 11199 64578157 ~ 64579408 (-) True G1761957
TU2018432 lncRNA downstream 36087 64553972 ~ 64554520 (-) True G1761944
TU2018428 lncRNA downstream 36858 64547230 ~ 64553749 (-) True G1761942
TU2018431 lncRNA downstream 37615 64552227 ~ 64552992 (-) True G1761943
TU2018480 lncRNA upstream 8420 64634935 ~ 64635371 (-) True G1761974
TU2018481 lncRNA upstream 9157 64635672 ~ 64637665 (-) True G1761975
TU2018482 lncRNA upstream 10738 64637253 ~ 64637960 (-) True G1761976
TU2018606 lncRNA upstream 33958 64660473 ~ 64662434 (-) True G1762051
TU2018596 lncRNA upstream 37196 64663711 ~ 64713957 (-) False LOC118942818
XM_036956538.1 mRNA downstream 57237 64525897 ~ 64533370 (-) True LOC118942817
XM_036958428.1 mRNA downstream 72569 64483522 ~ 64518038 (-) True cnga1b
XM_036958424.1 mRNA downstream 109620 64384916 ~ 64480987 (-) False nfxl1
XM_036958425.1 mRNA downstream 109620 64388159 ~ 64480987 (-) False nfxl1
XM_036958426.1 mRNA downstream 109620 64388882 ~ 64480987 (-) True nfxl1
XM_036956539.1 mRNA upstream 87307 64713822 ~ 64723784 (-) False LOC118942818
XM_036958443.1 mRNA upstream 150051 64776566 ~ 64790358 (-) True LOC118942984
XM_036956541.1 mRNA upstream 296974 64923489 ~ 64930766 (-) True LOC118942819
TU2018239 other downstream 172555 64417310 ~ 64418052 (-) True G1761826
TU2018157 other downstream 367119 64220922 ~ 64223488 (-) True LOC110517683
TU2018153 other downstream 384102 64205377 ~ 64206505 (-) False LOC110517683
TU2018442 other upstream 130 64626645 ~ 64633733 (-) True LOC110509409
TU2018636 other upstream 121989 64748504 ~ 64749274 (-) True G1762080
TU2018643 other upstream 127192 64753707 ~ 64754499 (-) False G1762085
TU2018644 other upstream 127211 64753726 ~ 64754499 (-) True G1762085
TU2018734 other upstream 229993 64856508 ~ 64857185 (-) False G1762162

Expression Profile