RNA id: TU2018442


Basic Information

Item Value
RNA id TU2018442
length 747
RNA type TUCP
GC content 0.57
exon number 4
gene id LOC110509409
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64590607 ~ 64647805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAGGACGTTTGccgaggtggaggagagggtgtcCCAGCATGTGGGCTGTCTGAGGGCGGAGCTAGAGCGTCGAGAGGCGGAGTTAGAGCATGAGAGGCGGGATGCGGCGCGgctggagagggagaatgaggagcTGGAGGACCAGGCTTCCCATCTCTCCCGGCAGGTGGCGGTCTCCGTGGAGATGATGGCCACTCTGAAAAGAGACCTGCAGGGGAAGGACCAGGAGCTGTGTCGCAAGCAGCAGGAGGTGTGTGATATTGAGCGGTTCCTGAcagccacagcagagagagaagcagaggccAAGCTTCAGCTGCAGACCTTCATAGAGGCTCTGCTGGAACGGGCCGACCGGGCAGAGAGAAAACTGCAGCTACTGGTGGCTACAGACAGACACGCCCACAACGATGACAGACACGCCCACAACGATGACAGACACACCCACAATGATGACAGGCACACCCACAACGATGACAGACACACCCACAATGATGACAGACACACCCACAATGATAATAGCCGTACATACAATAACGATAGTCACTCCCACAATGGGACCAATGGCCACAGGACCAATGGACACGCCCACAACGGGAGTGAAGACGACATCATCACAGGGTCAAAGTTAATTGGCTACAGGAGAAGCTACAGTGTATCTGGGTCACACAGACTAGGAGACCAGATCTATCACAACAACTATGGagCCCCCGCTGGTCGTATGCGGACGCTGTCCCTGGGTTCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2018466 lncRNA downstream 12818 64613066 ~ 64613827 (-) True G1761963
TU2018435 lncRNA downstream 28933 64590607 ~ 64597712 (-) False LOC110509409
TU2018440 lncRNA downstream 28933 64590607 ~ 64597712 (-) False LOC110509409
TU2018441 lncRNA downstream 28933 64590607 ~ 64597712 (-) False LOC110509409
TU2018460 lncRNA downstream 45452 64580497 ~ 64581193 (-) True G1761958
TU2018480 lncRNA upstream 1202 64634935 ~ 64635371 (-) True G1761974
TU2018481 lncRNA upstream 1939 64635672 ~ 64637665 (-) True G1761975
TU2018482 lncRNA upstream 3520 64637253 ~ 64637960 (-) True G1761976
TU2018606 lncRNA upstream 26740 64660473 ~ 64662434 (-) True G1762051
TU2018596 lncRNA upstream 29978 64663711 ~ 64713957 (-) False LOC118942818
XM_036956538.1 mRNA downstream 93275 64525897 ~ 64533370 (-) True LOC118942817
XM_036958428.1 mRNA downstream 108607 64483522 ~ 64518038 (-) True cnga1b
XM_036958425.1 mRNA downstream 145658 64388159 ~ 64480987 (-) False nfxl1
XM_036958426.1 mRNA downstream 145658 64388882 ~ 64480987 (-) True nfxl1
XM_036958427.1 mRNA downstream 238837 64386561 ~ 64387808 (-) True LOC118942981
XM_036956539.1 mRNA upstream 80089 64713822 ~ 64723784 (-) False LOC118942818
XM_036958443.1 mRNA upstream 142833 64776566 ~ 64790358 (-) True LOC118942984
XM_036956541.1 mRNA upstream 289756 64923489 ~ 64930766 (-) True LOC118942819
TU2018436 other downstream 130 64590607 ~ 64626515 (-) False LOC110509409
TU2018239 other downstream 208593 64417310 ~ 64418052 (-) True G1761826
TU2018157 other downstream 403157 64220922 ~ 64223488 (-) True LOC110517683
TU2018154 other downstream 420140 64205377 ~ 64206505 (-) False LOC110517683
TU2018636 other upstream 114771 64748504 ~ 64749274 (-) True G1762080
TU2018643 other upstream 119974 64753707 ~ 64754499 (-) False G1762085
TU2018644 other upstream 119993 64753726 ~ 64754499 (-) True G1762085
TU2018734 other upstream 222775 64856508 ~ 64857185 (-) False G1762162

Expression Profile