RNA id: TU1944367


Basic Information

Item Value
RNA id TU1944367
length 227
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1699284
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45650 ~ 55412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGTTATTCTAGCTCTGATGCCCTCAGAACCTTgatgagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagatggtACGGGTTTCCCTAGTGATCTGATGTCATTATTTTCTGGACAGATTTGGGTCAGATGATTCTTCAGTGTCCTGGatgtgagtgagagaaagggtggtagagagttagatagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944357 lncRNA upstream 13046 32283 ~ 32604 (+) True G1699274
TU1944372 lncRNA downstream 7440 62852 ~ 63162 (+) False G1699289
TU1944373 lncRNA downstream 7440 62852 ~ 63162 (+) False G1699289
TU1944374 lncRNA downstream 7440 62852 ~ 63162 (+) True G1699289
TU1944397 lncRNA downstream 32345 87757 ~ 95690 (+) True G1699302
TU1944399 lncRNA downstream 44633 100045 ~ 100372 (+) True G1699304
XM_036956542.1 mRNA downstream 4850 60262 ~ 194218 (+) False LOC118942820
XM_036956545.1 mRNA downstream 169717 225129 ~ 464574 (+) False LOC118942821
XM_036956544.1 mRNA downstream 287245 342657 ~ 464574 (+) False LOC118942821
XM_036956490.1 mRNA downstream 424343 479755 ~ 566322 (+) False LOC101268929
XR_005038429.1 mRNA downstream 424343 479755 ~ 566322 (+) False LOC101268929
TU1944334 other downstream 4907 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 1027279 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 1038737 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 1247474 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 1287087 1342499 ~ 1343138 (+) True G1699724

Expression Profile