RNA id: TU1944330


Basic Information

Item Value
RNA id TU1944330
length 1097
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G1699253
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 149399 ~ 204984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagagagagagagacagagagagagagacagagagacagagagagagacagagacacagagagagagagagagagagacagagagagagagagagagacagagagagagagagagacagagagacagagacagagagagacagagagagagagagacagagagacagagagagagagacacacagagagagagagagacaaacttgtgtgagtgtaatatttattgttcactttttattgtttatttcacttttgtttatcaatttcacttgctttggcaacgtaaatacatgtttccatgccaataaagcccttaaattgatttgatttgagagagagagtgtatttcATTTGCAGCCACTAGTTTCAGGTCAGCTCCCCATTTCAGTCTCTGTTAATAAACTTCACCTTTCCTGTTAGTGAGTGAGTTGTCATAGAAACAGCTGTATATTACCTGGGGAAATTCTAATAGCCATGAAGTTGTCCTGTAAAATGTGTCTGTCCTGTACTGTGGGTCTGTCCTGTACTGTGGGTCTGTCCTGTACTGTGGGTCTGATTCAAAACTGCTCTCCTGTCCTAGTCCCCTTCTCTTTACCCTTCCTAGGGTCCCTATGTAGGGTGGTTTGTCATGTCTGTTATCCTAACTAGGGTCCCTATGTAGGGTGGTTTCATCATGTGTGTACCCTTCCTAGGGTCCCTATGTAGGGTGGTTTCATCATGTGTGTACCCTTCCTAGGGTCCCTTTTGTAGGGTGGTTTTATCATGTGTGTACCCTTCCTAGGGTCCCTATGAAGGTGTGATGTATCAGTTGTTTTGCCAGTCTAAACTGTCTCAGATTGCCGGCCAACACTTTCAtttctgtgtgtctttctctccttttcatTCTGTTGAAAGACGTCCATAAAGATCATCGTTACGCCAACCGTCTCCTACAGACTTGTTCTAAAGTATATGCAAACAcatcaataaatatatatttatatatagaaGAGTAGCTAGATATAGTTGACTGTAACAATTTGCACAGTGTCTGAAGAGAAGTCAGGAATGATCCGTCTAAACAAAAATGGCTACCGAACTCCAACTCCCACAATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944404 lncRNA upstream 42774 105067 ~ 107214 (+) True G1699306
TU1944406 lncRNA upstream 45534 103969 ~ 104454 (+) True G1699307
TU1944399 lncRNA upstream 49616 100045 ~ 100372 (+) True G1699304
TU1944397 lncRNA upstream 54298 87757 ~ 95690 (+) True G1699302
TU1944374 lncRNA upstream 86826 62852 ~ 63162 (+) True G1699289
TU1944449 lncRNA downstream 20266 225250 ~ 409186 (+) True LOC118942821
TU1944457 lncRNA downstream 27940 232924 ~ 233994 (+) True G1699347
TU1944465 lncRNA downstream 58786 263770 ~ 264713 (+) True G1699354
TU1944472 lncRNA downstream 67786 272770 ~ 273083 (+) True G1699360
TU1944478 lncRNA downstream 73157 278141 ~ 280770 (+) False G1699363
XM_036956545.1 mRNA downstream 20145 225129 ~ 464574 (+) False LOC118942821
XM_036956544.1 mRNA downstream 137673 342657 ~ 464574 (+) False LOC118942821
XM_036956490.1 mRNA downstream 274771 479755 ~ 566322 (+) False LOC101268929
XR_005038429.1 mRNA downstream 274771 479755 ~ 566322 (+) False LOC101268929
XR_005038430.1 mRNA downstream 274771 479755 ~ 566322 (+) False LOC101268929
TU1944334 other upstream 8739 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 877707 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 889165 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 1097902 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 1137515 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 1332972 1537956 ~ 1538880 (+) True G1699804

Expression Profile