RNA id: TU1945670


Basic Information

Item Value
RNA id TU1945670
length 1649
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G1700229
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 164610 ~ 204375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGGGACCCTAGGAAGGGTACACACATGATGAAACCACCCTACATAGGGACCCTAGGAAGGGTACACACATGATGAAACCACCCTACATAGGGACCCTAGTTAGGATAACAGACATGACAAACCACCCTACATAGGGACCCTAGGAAGGGTAAAGAGAAGGGGACTAGGACAGGAGAGCAGTTTTGAATCAGACCCACAGTACAGGACAGACCCACAGTACAGGACAGACCCACAGTACAGGACAGACACATTTTACAGGACAACTTCATGGCTATTAGAATTTCCCCAGGTAATATACAGCTGTTTCTATGACAACTCACTCACTAACAGGAAAGGTGAAGTTTATTAACAGAGACTGAAATGGGGAGCTGACCTGAAACTAGTGGCTGCAAATgaaatacactctctctctcaaatcaaatcaatttaagggctttattggcatggaaacatgtatttacgttgccaaagcaagtgaaattgataaacaaaagtgaaataaacaataaaaagtgaacaataaatattacactcacacaagtttgtctctctctctctctgtctctctgtctctctctctctctgtctctctctctctgtctctctctctctctctctgtctctctctctctctctctctctgtctctctctctctgtctctctctctctctctcgctgtccatCCATCCAGTCAGTCATTCTTCAGGGAGGTTTATAACGGAGGGTAGATGGAGAAAGCAGAAGAGAACAGCTCCACCTCACACACTGTcggtgtaccaaatggcaccctattccctacatagtgcactactttagaccagggcctataggactctatgtagggaataggatgccatttgggacactcccACAGACAGACACGGTTCTCATTTTGGTTCATGTGTTCCACAACACAGGGGGGGGGTGTCAGACTCCCAGCCAACTTGGCTAGAACAAACACCAGGAGTCTCCAGAGACTAATAGTCCCAGAAATAATTACAAAATCACATCGCTGTGTTTTCTTTACAATGTCTGATTGTCAGATGTGTGTTTTAGAGTGGGGTGAAATAATCACCCTCTAACACTCCCCGAGACGCTTCTGCAATGCAGGGAGTCCTTTCTATAAGTCATGTTTAGAGACAAACactaagcatgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtcagtgtaATGGTATGGACAGGGACGTCAGTGAGCTCACATGAACAGTCCATCACATGTTACAGTGAGAGTTCTAGaccatctataccataaataccatctataccataaataccatctataccatctataccatctataccataaataccatctataccagagataccatctataccatagatacaatctataccatctataccatctataccataaataccattTATACCATagataccatctataccatctataccataaataccatctataccatctataccatctataccataaataccatctataccatctataccatagataccatctataccatagataccatctataccatctataccatctttaccatctataccataaataccatctata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945681 lncRNA downstream 34995 127454 ~ 129615 (-) False G1700236
TU1945682 lncRNA downstream 34995 129134 ~ 129615 (-) True G1700236
TU1945661 lncRNA downstream 57780 103971 ~ 106830 (-) True G1700222
TU1945646 lncRNA downstream 81279 82415 ~ 83331 (-) False G1700211
TU1945719 lncRNA upstream 13070 217445 ~ 218977 (-) True G1700264
TU1945723 lncRNA upstream 23063 227438 ~ 227996 (-) True G1700268
TU1945732 lncRNA upstream 41226 245601 ~ 245934 (-) True G1700277
TU1945738 lncRNA upstream 57337 261712 ~ 265252 (-) True LOC118942822
TU1945746 lncRNA upstream 64383 268758 ~ 268991 (-) True G1700290
XR_005038451.1 mRNA upstream 56739 261114 ~ 265635 (-) False LOC118942822
XM_036956543.1 mRNA upstream 141598 345973 ~ 348985 (-) True LOC110517722
XR_005038452.1 mRNA upstream 376999 581374 ~ 583017 (-) False LOC118942823
XM_036958447.1 mRNA upstream 381360 585735 ~ 785374 (-) True cacna2d4a
XM_036956548.1 mRNA upstream 620215 824590 ~ 851763 (-) False LOC110516566
TU1945775 other upstream 148112 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 1114852 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 1164774 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1918154 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1984058 2188433 ~ 2189666 (-) True G1701041

Expression Profile