RNA id: TU1945700


Basic Information

Item Value
RNA id TU1945700
length 261
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1700253
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 172334 ~ 173476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atTATATAGAGGTAAAGGAGGGGAGGGATAATGATGGAGACTGTAGATGTTTTactgggtgtattatatagaggtaaaggagggaaggagggataatGTTGGAGACTGTAGATGTTTTactgggtgtattatatagaggTAAAGGAGGGGAGGGATAATGTTGGAGACTGTAGATGTTTTactgggtgtattatatagaggtaaaggagggaaggagggataatgatggagactgtagatgttttactgggtgtattatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945681 lncRNA downstream 42719 127454 ~ 129615 (-) False G1700236
TU1945682 lncRNA downstream 42719 129134 ~ 129615 (-) True G1700236
TU1945661 lncRNA downstream 65504 103971 ~ 106830 (-) True G1700222
TU1945650 lncRNA downstream 89003 82415 ~ 83331 (-) False G1700211
TU1945702 lncRNA upstream 2217 175693 ~ 176096 (-) True G1700255
TU1945675 lncRNA upstream 21843 195319 ~ 201865 (-) False G1700232
TU1945676 lncRNA upstream 21843 195319 ~ 257712 (-) False G1700232
TU1945674 lncRNA upstream 24222 197698 ~ 201865 (-) False G1700232
TU1945677 lncRNA upstream 24222 197698 ~ 201865 (-) True G1700232
XR_005038451.1 mRNA upstream 87638 261114 ~ 265635 (-) False LOC118942822
XM_036956543.1 mRNA upstream 172497 345973 ~ 348985 (-) True LOC110517722
XR_005038452.1 mRNA upstream 407898 581374 ~ 583017 (-) False LOC118942823
XM_036958447.1 mRNA upstream 412259 585735 ~ 785374 (-) True cacna2d4a
XM_036956548.1 mRNA upstream 651114 824590 ~ 851763 (-) False LOC110516566
TU1945775 other upstream 179011 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 1145751 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 1195673 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1949053 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 2014957 2188433 ~ 2189666 (-) True G1701041

Expression Profile