RNA id: TU1945677


Basic Information

Item Value
RNA id TU1945677
length 3783
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G1700232
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 195319 ~ 257712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggggaggaagaagagggagaggagggagaagagggagggatagaggggggagggaggataagagggggaggagaggagggatagaggagaggagggatagaggagaggagaggagggatagaggtataGAGAAGATATGGACATGGGGTCTGTGTTTCGTCTGTGTGGTCTGGAGACAAGACTGATAACTAGCTCACCCCGGATTtctcacacgcgcacacacacacacacacacacacacacacacacacacacacacgaccaccTCCACACTGTTGTGATACTATAGAGccaggagagagggtgggggggactgagagagagagagagagagactgtatatagacataatatgacatttgaaatgtgagagtctctcacatctctctctatatatataatatttactgttcactttttatttcacttttcttTATCCATTtgacttgctttgacaatgtaaatatatgtttccctgccaataaagacccttgaattgaactgaaagacagagagagaggcagacagacaggggggcagacagagagagaggcagacagagagagaggcagacagacagggaggcagacagacagggaggcagacagacagggaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagagagagaggcagacagacagggcggcagacagacagggaggcagacagagagagaggcagacagacagggaggcagacagacagggaggcagacagacagagaggcagacagagagagaggcagacagacagggaggcagacagacagggaggcagacagacagggaggcagacagagagagaggcatacagacagggaggcagacagagagagaggcagacagagagagaggcagacagacagggaggcagacagagatagaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagagagagaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagagagaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagacagggaggcagacagagagagaggcagacagagagagaggcagacagagagagaggcagacagagagagaggcaggcagagagacagggagggattaaACGAGCGTAACACAACACTCCCCAGAATATGGAGGTCAATAATTGGTAATGACagatataaaacaggttgtaaagCAGGTATGCCAGTCATCAAGATGGCCGCCGTGCTCATAAGACTGGCAGAGTAGTGGTGCCACGGGGTAATGATGCCCTGGACTTGCGTGCTGTACGTGGCTCCACTCTCCTGGAACTGATAAGATCAACCCTTGTGTCACAGGGTTGAATTGAATAAAGTTTATTGAGGGTTGAGGTGGCACGCGATAGGGCTGCTCTCAGGACAGGAGGCAGAACAACCAATCAGAGAAGGCCTGTCTCTGGACAAGTCCAGGGACTCTGCTCTTAGGACAGGAGGCAGAACAACCAATCAGAGAAGGCCTGTCTCTGGACCTTGATGACGGTGTCTTTGTTTTCGTTCTCCAGCTCCTGTCACTATTGGACGAATGGAATTGACTAATTTCCAAAGTCTGAGGGACAAACCAGACCACAGGCCTGAGGAACCTCTGGCTCTGACACACGTCATCCCTGTTCTCTACATCCTGTTCTCTACATCCTGTTCTCCACATCCTGTTATCCACATCCTGTCCTCCACATCCTGTTCTCCACATCCTGTCCTCCACATCCTGTCCCCCACATCCTGTTCTCCACATCCTGTTCTCCACATCCTGTTCTCCAGACTACAGTACACCAGTATAGTGTGGTTCTGATAATGTTAGACTGTAGTCAATGTGGTTCTGATACTGTTAGACTGTAGTCAAAGTGGTTCTGATACTGTTAGACTGTCGTTAGACTGGAAGTGACATCATGGTGATACTGTTAGACTGTCGTTagacaggaagtgacatcatggTGGAAGGTTAAGGGTTCAATATGTAGTGTCTGACTGTAGAAAGACCCTGACTCAAACCGTGTGAAACCACAGGAATGACactcatgtctgtctgcctggctctctatctgtctgatgtgggtttgtgggtctgtgtgtgtgagaggcgtGTGTGCATTCtcgcagtatgtgtgtgtgtgtggtgtgtgtgtgttcagtaggTGTTGGTCACatctctgtctctaactgttaTATGAGCTGTGGTCAGAATGACTAACAATAACCACCAGGTCAGAACCATTAAccaccagagagaggagggagagagagagagagagagagatagagagagatagagagagagagagagagagagagagagagagagagagggagaggtggagagagagagagagagagggagaggtggagagagagagagagagagagaggtggagagagagaaggagggagagagagagagagaaggagggagagagagaaggaggtagagaagagaaggagagggttgagagagagggagagagagaggggtggagagagaggagggagagagagaaggagggagagaagagaaggagaggggtggagagagagggagagagaggggtggaaagagggggggaggagagagggagagagaggggtggagagggaaagagaggggtggagagagagagagagggggagagaaggagggagagagagaaggaggtagagaagagaaggagagggttggagagagagggagagggagaggggtggagagagaggagggagagagagagaaggagggagagagagaaggaaggagagaagagaatgagaggggtggagagagagggagagagaggggtggagagaggcggggaggagagagggagagagaagggtggagagggagagagaggggtggagagagagagagagagagagagagaggaggtgaagagagagaggtagagagggggagagaggggtggagagtgagagagagggggtggatagagagggagagagaggggtggagagggagagagagaggtggagaggcagagagagaggggttggagagagagggtagagagagagagagagagaggggtggagagggagagagagagagagagatgggtggagagggagagagagatggagagagaggggtggagagagagagaggaggaagagaaagagagaaagagtaagcAGGGTGGGACTGATATGAGCCAGGTCTTATCATGTAGATGTACAGACAGTATAATCTCCAGAGAACGGAGGAAGACTCAACTGTGAACTCTCACACACTCAACTATCTGGTCCCAGACTAGACCTGTAGCAGTAAGGCCACGGTTCATCACCGGGGTGAGTCCAGCTATTTACCGCCAATACGACACACAAAGGGAAGTGAATGAACCGTGTCATACAGGAGCTACAACCACAAAACACCATTTAAGGTGAACAATGaagtgtgagtgtttgtggtgGTCGACTGCTCCTGTTGGTTTAGATAGGCGTTTCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945695 lncRNA downstream 20510 167491 ~ 177188 (-) True G1700248
TU1945702 lncRNA downstream 21602 175693 ~ 176096 (-) True G1700255
TU1945700 lncRNA downstream 24222 172334 ~ 173476 (-) True G1700253
TU1945681 lncRNA downstream 68083 127454 ~ 129615 (-) False G1700236
TU1945682 lncRNA downstream 68083 129134 ~ 129615 (-) True G1700236
TU1945671 lncRNA upstream 1872 203737 ~ 204375 (-) True G1700229
TU1945719 lncRNA upstream 15580 217445 ~ 218977 (-) True G1700264
TU1945723 lncRNA upstream 25573 227438 ~ 227996 (-) True G1700268
TU1945732 lncRNA upstream 43736 245601 ~ 245934 (-) True G1700277
TU1945738 lncRNA upstream 59847 261712 ~ 265252 (-) True LOC118942822
XR_005038451.1 mRNA upstream 59249 261114 ~ 265635 (-) False LOC118942822
XM_036956543.1 mRNA upstream 144108 345973 ~ 348985 (-) True LOC110517722
XR_005038452.1 mRNA upstream 379509 581374 ~ 583017 (-) False LOC118942823
XM_036958447.1 mRNA upstream 383870 585735 ~ 785374 (-) True cacna2d4a
XM_036956548.1 mRNA upstream 622725 824590 ~ 851763 (-) False LOC110516566
TU1945775 other upstream 150622 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 1117362 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 1167284 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1920664 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1986568 2188433 ~ 2189666 (-) True G1701041

Expression Profile