RNA id: TU1945719


Basic Information

Item Value
RNA id TU1945719
length 238
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1700264
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 217445 ~ 218977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTGAATTAACCACAGCCCCACACAGACAGATCCATGGTTCAGGACAGTGGTAATGTTGGCCATGCTAACATCAATTATACCTTCGTTATGACCTTGATCTTTTCATTGTATCTGTttattctcctctcttcctcttcagaTGTATATTTGGGGTCCTCGTCTTCCTATCTGGCACAAGCCTGACCACAAGTCGTTCCTTCCCTATTCCACATTGTGTCTTCCTATGGATGTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945670 lncRNA downstream 13070 164610 ~ 204375 (-) False G1700229
TU1945671 lncRNA downstream 13070 203737 ~ 204375 (-) True G1700229
TU1945675 lncRNA downstream 15580 195319 ~ 201865 (-) False G1700232
TU1945674 lncRNA downstream 15580 197698 ~ 201865 (-) False G1700232
TU1945677 lncRNA downstream 15580 197698 ~ 201865 (-) True G1700232
TU1945723 lncRNA upstream 8461 227438 ~ 227996 (-) True G1700268
TU1945732 lncRNA upstream 26624 245601 ~ 245934 (-) True G1700277
TU1945738 lncRNA upstream 42735 261712 ~ 265252 (-) True LOC118942822
TU1945746 lncRNA upstream 49781 268758 ~ 268991 (-) True G1700290
TU1945762 lncRNA upstream 112544 331521 ~ 332256 (-) True G1700305
XR_005038451.1 mRNA upstream 42137 261114 ~ 265635 (-) False LOC118942822
XM_036956543.1 mRNA upstream 126996 345973 ~ 348985 (-) True LOC110517722
XR_005038452.1 mRNA upstream 362397 581374 ~ 583017 (-) False LOC118942823
XM_036958447.1 mRNA upstream 366758 585735 ~ 785374 (-) True cacna2d4a
XM_036956548.1 mRNA upstream 605613 824590 ~ 851763 (-) False LOC110516566
TU1945775 other upstream 133510 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 1100250 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 1150172 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1903552 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1969456 2188433 ~ 2189666 (-) True G1701041

Expression Profile