RNA id: TU1944457


Basic Information

Item Value
RNA id TU1944457
length 336
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1699347
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 232924 ~ 233994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtctctctccttcagtggtgtaaagtactgtctctctccttcagtggtgtaaagtaccgtctctctccttcagtggtgtaaagtacttaagtacaaatactttaaagtactactttagtAGTTTATTTTTTGGTatctctactttactgtactatcttgacaacttttacttttacttcactacattcctaaagaaaataatgtactttttacgccatacattttccctgacacctaaaatactaggaaaattgtgaaattcacgtacttatcaagagaacatccctggtcatcccttctgcctctgatctggtggactcactaaacacacatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944331 lncRNA upstream 27940 149399 ~ 204984 (+) False G1699253
TU1944330 lncRNA upstream 27940 149988 ~ 204984 (+) True G1699253
TU1944429 lncRNA upstream 73278 159023 ~ 159646 (+) True G1699326
TU1944404 lncRNA upstream 125710 105067 ~ 107214 (+) True G1699306
TU1944406 lncRNA upstream 128470 103969 ~ 104454 (+) True G1699307
TU1944465 lncRNA downstream 29776 263770 ~ 264713 (+) True G1699354
TU1944472 lncRNA downstream 38776 272770 ~ 273083 (+) True G1699360
TU1944478 lncRNA downstream 44147 278141 ~ 280770 (+) False G1699363
TU1944476 lncRNA downstream 44788 278782 ~ 280770 (+) False G1699363
TU1944477 lncRNA downstream 45488 279482 ~ 281102 (+) True G1699363
XM_036956542.1 mRNA upstream 38706 60262 ~ 194218 (+) False LOC118942820
XM_036956544.1 mRNA downstream 108663 342657 ~ 464574 (+) False LOC118942821
XM_036956490.1 mRNA downstream 245761 479755 ~ 566322 (+) False LOC101268929
XR_005038429.1 mRNA downstream 245761 479755 ~ 566322 (+) False LOC101268929
XR_005038430.1 mRNA downstream 245761 479755 ~ 566322 (+) False LOC101268929
XM_036956491.1 mRNA downstream 245952 479946 ~ 566322 (+) False LOC101268929
TU1944334 other upstream 91675 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 848697 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 860155 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 1068892 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 1108505 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 1303962 1537956 ~ 1538880 (+) True G1699804

Expression Profile