RNA id: TU1944465


Basic Information

Item Value
RNA id TU1944465
length 255
lncRNA type read_through
GC content 0.53
exon number 3
gene id G1699354
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 263770 ~ 264713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggaggctagtaacagtgactatagttcagggcagggtactgggtggaggctagctagtaacagtgactaaggttcagggcagggtactgggggaggctagtaacagtgactatagttcagggcagggtactaggggaggctagtaacagtgactaaggttcagggcagggtactgggggaggctagtaacagtgactatagttcagggcagggtactgggtggaggctagtaacagtgactatagttcaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944457 lncRNA upstream 29776 232924 ~ 233994 (+) True G1699347
TU1944331 lncRNA upstream 58786 149399 ~ 204984 (+) False G1699253
TU1944330 lncRNA upstream 58786 149988 ~ 204984 (+) True G1699253
TU1944429 lncRNA upstream 104124 159023 ~ 159646 (+) True G1699326
TU1944404 lncRNA upstream 156556 105067 ~ 107214 (+) True G1699306
TU1944472 lncRNA downstream 8057 272770 ~ 273083 (+) True G1699360
TU1944478 lncRNA downstream 13428 278141 ~ 280770 (+) False G1699363
TU1944476 lncRNA downstream 14069 278782 ~ 280770 (+) False G1699363
TU1944477 lncRNA downstream 14769 279482 ~ 281102 (+) True G1699363
TU1944489 lncRNA downstream 66805 331518 ~ 332270 (+) True G1699374
XM_036956542.1 mRNA upstream 69552 60262 ~ 194218 (+) False LOC118942820
XM_036956544.1 mRNA downstream 77944 342657 ~ 464574 (+) False LOC118942821
XM_036956490.1 mRNA downstream 215042 479755 ~ 566322 (+) False LOC101268929
XR_005038429.1 mRNA downstream 215042 479755 ~ 566322 (+) False LOC101268929
XR_005038430.1 mRNA downstream 215042 479755 ~ 566322 (+) False LOC101268929
XM_036956491.1 mRNA downstream 215233 479946 ~ 566322 (+) False LOC101268929
TU1944334 other upstream 122521 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 817978 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 829436 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 1038173 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 1077786 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 1273243 1537956 ~ 1538880 (+) True G1699804

Expression Profile