RNA id: TU1945746


Basic Information

Item Value
RNA id TU1945746
length 207
lncRNA type intronic
GC content 0.36
exon number 2
gene id G1700290
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 268758 ~ 268991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAATGCTAGGTTAGGTTAATGCTAGGTTAGGTTAATGCAAGGTTAGGTTAATGCTAGGTTAATGCAAGGTTAGGTTAATGCTAGGTTAGGTTAATACTAGGTTAGATTAACGCTAGGTTAATGCTAGGTTAATGCTAGGTTAATGCTAGGTTAAGTTAATGCTAGGGTAGGTTACTGCTAGGTTAATGCTAGGTTAGATTAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945738 lncRNA downstream 3506 261712 ~ 265252 (-) True LOC118942822
TU1945676 lncRNA downstream 11046 195319 ~ 257712 (-) False G1700232
TU1945732 lncRNA downstream 22824 245601 ~ 245934 (-) True G1700277
TU1945723 lncRNA downstream 40762 227438 ~ 227996 (-) True G1700268
TU1945719 lncRNA downstream 49781 217445 ~ 218977 (-) True G1700264
TU1945762 lncRNA upstream 62530 331521 ~ 332256 (-) True G1700305
TU1945770 lncRNA upstream 81203 350194 ~ 354814 (-) True G1700310
TU1945774 lncRNA upstream 82663 351654 ~ 352441 (-) True G1700311
TU1945783 lncRNA upstream 101906 370897 ~ 372853 (-) True G1700318
TU1945784 lncRNA upstream 108218 377209 ~ 413123 (-) True G1700319
XR_005038451.1 mRNA downstream 3123 261114 ~ 265635 (-) False LOC118942822
XM_036956543.1 mRNA upstream 76982 345973 ~ 348985 (-) True LOC110517722
XR_005038452.1 mRNA upstream 312383 581374 ~ 583017 (-) False LOC118942823
XM_036958447.1 mRNA upstream 316744 585735 ~ 785374 (-) True cacna2d4a
XM_036956548.1 mRNA upstream 555599 824590 ~ 851763 (-) False LOC110516566
XM_036956547.1 mRNA upstream 555599 824590 ~ 851764 (-) False LOC110516566
TU1945775 other upstream 83496 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 1050236 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 1100158 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1853538 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1919442 2188433 ~ 2189666 (-) True G1701041

Expression Profile