RNA id: TCONS_00004822


Basic Information

Item Value
RNA id TCONS_00004822
length 497
lncRNA type retained_intron
GC content 0.52
exon number 5
gene id XLOC_002589
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7975585 ~ 7988417 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCCCCATTACCCCTTTTGTGGTACCGAAGTGGCTGTTTTAAGGGATATCGCCTTCATATCTTCGCTTATTCCCCCCCAGCATCGCTGGAGACAGAGGTGGCTTCAGTAAGCCTGGTGATGGTGAAATGGGAGCCCCAGAGGAGCAAGATGACTCTGAAAACAGCACTATCTACATCACGGGACTGACTGAGAATGCTACGTTGGAGGAAGTCGCTGACTTTTTCAAGCACAGCGGCATCATTAGGatcAACAAACGAACAGGCCTGCCTGCTGTCAACATATACACCGATAAAGATACTGGCAAACCTAAAGGCGATGCCACCTTATCCTACGAGGAGCCTCCATCTGCTAAAGCAGCAGTCGAGTGGTTTGATGGAAAAGATTTCCAAGGGAAGAAGCTGAAGGTGTCAATGGCCAGACGCAAGCCCATGATGGGTATGATGCGCGGGGGTATGCCAATGAGAGGAGACCGCGGTGGCATGATGGGACGAGGAGG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051256 mitotic spindle midzone assembly biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0007088 regulation of mitotic nuclear division biological_process
GO:1903041 regulation of chondrocyte hypertrophy biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2317 Enables chromatin binding activity. Acts upstream of or within several processes, including mitotic spindle midzone assembly; regulation of chondrocyte hypertrophy; and regulation of mitotic nuclear division. Predicted to be active in nucleus. Is expressed in fin bud; nervous system; and trunk. Human ortholog(s) of this gene implicated in Ewing sarcoma. Orthologous to human EWSR1 (EWS RNA binding protein 1).

Ensembl:

ensembl_id ENSDART00000138942

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005747 lncRNA downstream 90929 7883753 ~ 7886040 (-) False XLOC_002586
TCONS_00005748 lncRNA downstream 91032 7884013 ~ 7885937 (-) False XLOC_002586
TCONS_00004807 lncRNA downstream 155427 7814644 ~ 7821542 (-) True XLOC_002583
TCONS_00004808 lncRNA downstream 156494 7814644 ~ 7820475 (-) False XLOC_002583
TCONS_00004806 lncRNA downstream 165215 7810664 ~ 7811754 (-) False XLOC_002583
TCONS_00005749 lncRNA upstream 1124 7981119 ~ 7983744 (-) True XLOC_002590
TCONS_00004828 lncRNA upstream 65422 8045417 ~ 8046763 (-) True XLOC_002593
TCONS_00004840 lncRNA upstream 286276 8266271 ~ 8269833 (-) False XLOC_002599
TCONS_00005997 lncRNA upstream 638723 8618718 ~ 8621543 (-) False XLOC_002602
TCONS_00004846 lncRNA upstream 638854 8618849 ~ 8621273 (-) True XLOC_002602
TCONS_00004817 mRNA downstream 2814 7916720 ~ 7974155 (-) False XLOC_002588
TCONS_00004818 mRNA downstream 2814 7918018 ~ 7974155 (-) False XLOC_002588
TCONS_00004816 mRNA downstream 63378 7902345 ~ 7913591 (-) True XLOC_002587
TCONS_00004815 mRNA downstream 67130 7901012 ~ 7909839 (-) False XLOC_002587
TCONS_00004814 mRNA downstream 91315 7884128 ~ 7885654 (-) True XLOC_002586
TCONS_00004824 mRNA upstream 8751 7988746 ~ 8033468 (-) False XLOC_002591
TCONS_00004825 mRNA upstream 9510 7989505 ~ 8032885 (-) True XLOC_002591
TCONS_00004826 mRNA upstream 54693 8034688 ~ 8041948 (-) True XLOC_002592
TCONS_00004827 mRNA upstream 65369 8045364 ~ 8046764 (-) False XLOC_002593
TCONS_00004829 mRNA upstream 71621 8051616 ~ 8053753 (-) False XLOC_002594
TCONS_00004819 other downstream 17131 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004811 other downstream 84285 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other downstream 85103 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004790 other downstream 464846 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 624859 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004848 other upstream 695895 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 1036726 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 1057363 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 1161570 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004869 other upstream 1554787 9534782 ~ 9538326 (-) False XLOC_002618

Expression Profile

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