RNA id: TU1945770


Basic Information

Item Value
RNA id TU1945770
length 237
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1700310
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 350194 ~ 354814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgctgctactactacaactactaatactaccactactactactaatgatactactactacaactactaccactattaacactaccactactactgctactactacttccaccactactactagtactacaactactactagtactaccactacttctaatactaccactattactaccactactactactactactaccactactactactactaccactaccactactactact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945762 lncRNA downstream 17938 331521 ~ 332256 (-) True G1700305
TU1945746 lncRNA downstream 81203 268758 ~ 268991 (-) True G1700290
TU1945738 lncRNA downstream 84942 261712 ~ 265252 (-) True LOC118942822
TU1945732 lncRNA downstream 104260 245601 ~ 245934 (-) True G1700277
TU1945723 lncRNA downstream 122198 227438 ~ 227996 (-) True G1700268
TU1945783 lncRNA upstream 16083 370897 ~ 372853 (-) True G1700318
TU1945784 lncRNA upstream 22395 377209 ~ 413123 (-) True G1700319
TU1945833 lncRNA upstream 122089 476903 ~ 550576 (-) True G1700358
TU1945841 lncRNA upstream 133480 488294 ~ 489821 (-) True G1700365
TU1945862 lncRNA upstream 187627 542441 ~ 543472 (-) True G1700385
XM_036956543.1 mRNA downstream 1209 345973 ~ 348985 (-) True LOC110517722
XR_005038451.1 mRNA downstream 84559 261114 ~ 265635 (-) False LOC118942822
XR_005038452.1 mRNA upstream 226560 581374 ~ 583017 (-) False LOC118942823
XM_036958447.1 mRNA upstream 230921 585735 ~ 785374 (-) True cacna2d4a
XM_036956548.1 mRNA upstream 469776 824590 ~ 851763 (-) False LOC110516566
XM_036956547.1 mRNA upstream 469776 824590 ~ 851764 (-) False LOC110516566
XM_036956549.1 mRNA upstream 469776 824590 ~ 851766 (-) False LOC110516566
TU1946269 other upstream 964413 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 1014335 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1767715 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1833619 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 2217860 2572674 ~ 2575261 (-) False G1701824

Expression Profile