RNA id: TU1944547


Basic Information

Item Value
RNA id TU1944547
length 583
lncRNA type intronic
GC content 0.40
exon number 3
gene id G1699418
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 451259 ~ 453942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcaccagtcgtcctctctgttttccactagtttaatatcaccagtcgtcctctctgttttccactagtttaatatcaccagtcgtcctctctgttttccactagtttaatatcaccagtcgtcctctctgttttccactagtttaatatcaccagtcgtcctctctgttttctactagtttaatatcaccagtcgtcctctctgttttccactagtttaatatcaccagtcgtcctctctgttttctactagtttaatatcaccagtcgtcctctctgttttctactagtttaatgtcaccaggtcctctctgttttccactagtttaatatcaccagtcgtcctctctgttttctactagtttaatgtcaccaggtcctctctgttttccactagtttaatatcaccagtcatcctctctgttttctactagtttaatatcaccagtcgtcctctctgttttccactagtttaatatcaccaggtcctctctgttttccactagtttaatatcaccagtcgtcctctctgttttccactagtttaatatcaccagtcgtcctctctgttttccactagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944449 lncRNA upstream 42073 225250 ~ 409186 (+) True LOC118942821
TU1944519 lncRNA upstream 67672 383047 ~ 383587 (+) True G1699394
TU1944516 lncRNA upstream 70556 379558 ~ 380703 (+) True G1699392
TU1944500 lncRNA upstream 96015 354579 ~ 355244 (+) True G1699379
TU1944496 lncRNA upstream 100456 350196 ~ 350803 (+) True G1699378
TU1944550 lncRNA downstream 1244 455186 ~ 456323 (+) True G1699421
TU1944587 lncRNA downstream 86383 540325 ~ 542009 (+) True G1699451
TU1944588 lncRNA downstream 89323 543265 ~ 543981 (+) True G1699452
TU1944591 lncRNA downstream 94374 548316 ~ 585797 (+) False G1699455
TU1944592 lncRNA downstream 94374 548316 ~ 551808 (+) False G1699455
XM_036956542.1 mRNA upstream 257041 60262 ~ 194218 (+) False LOC118942820
XM_036956490.1 mRNA downstream 25813 479755 ~ 566322 (+) False LOC101268929
XR_005038429.1 mRNA downstream 25813 479755 ~ 566322 (+) False LOC101268929
XR_005038430.1 mRNA downstream 25813 479755 ~ 566322 (+) False LOC101268929
XM_036956491.1 mRNA downstream 26004 479946 ~ 566322 (+) False LOC101268929
NM_001281346.1 mRNA downstream 48934 502876 ~ 563146 (+) False LOC101268929
TU1944334 other upstream 310010 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 628749 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 640207 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 848944 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 888557 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 1084014 1537956 ~ 1538880 (+) True G1699804

Expression Profile