RNA id: TCONS_00050768


Basic Information

Item Value
RNA id TCONS_00050768
length 1178
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_025902
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62196672 ~ 62203711 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATCATCCTCAAGCAGACCTCAGATCAGTTCGTGTCAGCGTGACCGTTAATATCCGCGGTTGTATAATCCTGACAGCTGATGCCGGGTCAGTGGTTTGTATGCGGGGCTCAGATGGTCACTTCCGCGTAGCTGATGTGCTGACTGTTAGCACCATGAGTTTAGCAGCAGTTTTGGGTTTAAAGAGTGTAAGATGTCAGATGTTCAGGTTAGTGTGTGGCAGTAAAACATGTAATGGTGTTTTGAGTCTGCGCAGTGCGGAGGGAAGAGCTGCGCGCGCATGTGCAGTGCGCTCACACAGCAACACATCGtTATGGCGGTGTCGGACGGCTCCATGTGTGTCTGTTCTGCACATGCGAACACTTTCCACTCTTCCTCCACCTCCATCATCCAGCGGAGACAAACCCAGCAGCCGGAAGACTGGACCAGTGACATGGAAATCTCTCGCTGTCACGTTTGCGCTGGGAGGAGGCCTGCTTCTAGCAATGAAATACTTCAAGAGGGAAAAAGAGGAATTGTttgagaaagaaagaacaaagtcGATAGGGAAGCCAGCTCTCGGAGGCCCGTTTTCACTCCTCGACCACAATAATAAACCCAGCCGGAGTGAGGATTTCCTCGGCCGCTGGCTGCTGATCTACTTCGGCTTCACGCACTGTCCAGACATCTGCCCTGATGAGCTGGAGAAAATGATCGAGGCCGTCGATGAGATCGACAACATTGACACTCTCCCAGACGTGACTCCGCTCCTGATCAGCATTGACCCGGAGAGAGACACCCCTGAAGCGCTGGCAGCTTATGTTAAAGATTTCTCCCCCAAGCTCATCGGTCTGACTGGCACGACGGCCCAGATTGAGCAGGTGTCCCGAGCCTACAGAGTTTACTACAGCCAGGGCCCTAAAGATGAAGACAACGACTACATCGTGGATCACACCATCATCATGTACCTGGTGGGACCCGACGGCCAGTTTCTGGAGTATTACGGACAGAACAAGAAGTCCTCGGAGATCGCCTCATCCATCGCATCCTACATGAGGAAGCACAAATACGGCAAATGAGGACATTACTCCTGTCAtcaatcatatttattttcagagCCACTCTGCTGGAGCATTCCCCGTTTCCCCATACTGCAGTGATGTTCAGAGCGTTCACATTCAATAAAGTGTGTTTGGGTTG

Function

GO:

id name namespace
GO:0008535 respiratory chain complex IV assembly biological_process
GO:0006825 copper ion transport biological_process
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0006878 cellular copper ion homeostasis biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-140909-1 Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human SCO1 (synthesis of cytochrome C oxidase 1).

Ensembl:

ensembl_id ENSDART00000097312

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052868 lncRNA upstream 134834 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00052396 lncRNA downstream 4123 62207834 ~ 62233239 (+) False XLOC_025904
TCONS_00052869 lncRNA downstream 24799 62228510 ~ 62241916 (+) False XLOC_025904
TCONS_00052397 lncRNA downstream 100331 62304042 ~ 62306549 (+) True XLOC_025908
TCONS_00052870 lncRNA downstream 165013 62368724 ~ 62384693 (+) True XLOC_025913
TCONS_00052871 lncRNA downstream 220624 62424335 ~ 62489117 (+) False XLOC_025914
TCONS_00050767 mRNA upstream 27612 62161249 ~ 62169060 (+) True XLOC_025901
TCONS_00050766 mRNA upstream 46844 62140077 ~ 62149828 (+) True XLOC_025900
TCONS_00050765 mRNA upstream 57717 62126981 ~ 62138955 (+) True XLOC_025899
TCONS_00050764 mRNA upstream 143358 62000822 ~ 62053314 (+) True XLOC_025897
TCONS_00050763 mRNA upstream 234839 61896514 ~ 61961833 (+) False XLOC_025896
TCONS_00050769 mRNA downstream 2147 62205858 ~ 62209351 (+) True XLOC_025903
TCONS_00050770 mRNA downstream 13016 62216727 ~ 62243210 (+) False XLOC_025904
TCONS_00050771 mRNA downstream 13768 62217479 ~ 62240119 (+) False XLOC_025904
TCONS_00050772 mRNA downstream 15447 62219158 ~ 62226590 (+) True XLOC_025905
TCONS_00050773 mRNA downstream 32732 62236443 ~ 62243210 (+) False XLOC_025904
TCONS_00050717 other upstream 3485917 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 4026258 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 4198113 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 4366753 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 4557224 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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