RNA id: TU1945890


Basic Information

Item Value
RNA id TU1945890
length 307
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1700396
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 548312 ~ 551803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagacagagagacagacagagagacagagagacagagagacagagagacagagagacagagagacagagagacagagagacagagagacagagagacagagacagagagacagagacagagagacagagagacagagagacagagacagagacagagagacagagacagagacagagagagagagagagacagagacagagacagacagagagacagagagacagagagacagcgagacagagacagagagagagagagagagagagagagagagagagagagacagagagacagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945833 lncRNA downstream 193 476903 ~ 550576 (-) True G1700358
TU1945888 lncRNA downstream 580 548312 ~ 550189 (-) False G1700396
TU1945862 lncRNA downstream 7297 542441 ~ 543472 (-) True G1700385
TU1945841 lncRNA downstream 60948 488294 ~ 489821 (-) True G1700365
TU1945784 lncRNA downstream 137646 377209 ~ 413123 (-) True G1700319
TU1945866 lncRNA upstream 11959 563762 ~ 566319 (-) False G1700387
TU1945867 lncRNA upstream 11959 563762 ~ 566319 (-) False G1700387
TU1945868 lncRNA upstream 11959 563762 ~ 566319 (-) True G1700387
TU1945869 lncRNA upstream 29582 581385 ~ 583301 (-) False LOC118942823
TU1945870 lncRNA upstream 29582 581385 ~ 583301 (-) False LOC118942823
XM_036956543.1 mRNA downstream 201784 345973 ~ 348985 (-) True LOC110517722
XR_005038451.1 mRNA downstream 285134 261114 ~ 265635 (-) False LOC118942822
XR_005038452.1 mRNA upstream 29571 581374 ~ 583017 (-) False LOC118942823
XM_036958447.1 mRNA upstream 33932 585735 ~ 785374 (-) True cacna2d4a
XM_036956548.1 mRNA upstream 272787 824590 ~ 851763 (-) False LOC110516566
XM_036956547.1 mRNA upstream 272787 824590 ~ 851764 (-) False LOC110516566
XM_036956549.1 mRNA upstream 272787 824590 ~ 851766 (-) False LOC110516566
TU1945775 other downstream 196260 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 767424 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 817346 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1570726 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1636630 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 2020871 2572674 ~ 2575261 (-) False G1701824

Expression Profile