RNA id: TU1944591


Basic Information

Item Value
RNA id TU1944591
length 302
lncRNA type read_through
GC content 0.50
exon number 2
gene id G1699455
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 548316 ~ 585797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctgtctctctgtctctctgtctctctgtctctctgtctgtctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctctctctctgtctctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctctgtctgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944588 lncRNA upstream 4335 543265 ~ 543981 (+) True G1699452
TU1944587 lncRNA upstream 6307 540325 ~ 542009 (+) True G1699451
TU1944544 lncRNA upstream 90230 449813 ~ 458086 (+) True G1699417
TU1944550 lncRNA upstream 91993 455186 ~ 456323 (+) True G1699421
TU1944547 lncRNA upstream 94374 451259 ~ 453942 (+) True G1699418
TU1944610 lncRNA downstream 194 585991 ~ 589388 (+) True G1699462
TU1944621 lncRNA downstream 40957 626754 ~ 778190 (+) False G1699463
TU1944655 lncRNA downstream 85287 671084 ~ 674195 (+) True G1699488
TU1944615 lncRNA downstream 125913 711710 ~ 713749 (+) False G1699463
TU1944617 lncRNA downstream 125913 711710 ~ 713749 (+) False G1699463
XM_036956545.1 mRNA upstream 83742 225129 ~ 464574 (+) False LOC118942821
XM_036956544.1 mRNA upstream 83742 342657 ~ 464574 (+) False LOC118942821
XM_036956542.1 mRNA upstream 354098 60262 ~ 194218 (+) False LOC118942820
XM_036956546.1 mRNA downstream 62112 647909 ~ 710000 (+) True LOC118936449
XM_036956555.1 mRNA downstream 267234 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 570917 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 570917 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 570917 1156714 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 407067 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 496894 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 508352 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 717089 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 756702 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 952159 1537956 ~ 1538880 (+) True G1699804

Expression Profile