RNA id: TCONS_00050769


Basic Information

Item Value
RNA id TCONS_00050769
length 759
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_025903
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62205858 ~ 62209351 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgagtgatccagaaccctgcagaattaaacatgaAGACACTGAACAACAAATAGacCTCATTGAAGAGTATGAGGAgattaaagaggaggaacatcatgtcaagaTTGAGGACaatcatttacagactgatggtattttgaaaaagaaaaataagaattgttttacctgcactcagtgtggacaGTGTTGTGAAGGAAAGGccaatcttaagattcacatgagaatccacactggagagaaaccattcacctgcactcagtgtggcaagagtttcagccaatcatcatcccttaataaacacatgatgattcacactggagacagaccatacacatgcactcagtgtgggaagagttttggccAATCATCAAATCTTAGTAAACACatgctgatccacactggagagaaaccgttcacctgcacccagtgtgggaagagtttcagccaatcatcaaaccttaatctacacatgaagatccacactggagagagaccatacacatgcactcaatgcGGGAAAAGCtttagccaatcatcaaaccttaatctacacatgatgctgacccacactggagagaaaccattcacatgtactcacTGTGGGAAGAGCTTTAGCCAATTAtccaaccttaatcaacacatgaagatccacactggaatACGAGAgcatatgtgctttgagtgtgagaagacttttattacagctagaGAATTGAAACGGCACCAGAGGAGTCACACTGCTCGCGTGTACCGCTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-62 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000126807

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052868 lncRNA upstream 144020 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00052869 lncRNA downstream 19159 62228510 ~ 62241916 (+) False XLOC_025904
TCONS_00052397 lncRNA downstream 94691 62304042 ~ 62306549 (+) True XLOC_025908
TCONS_00052870 lncRNA downstream 159373 62368724 ~ 62384693 (+) True XLOC_025913
TCONS_00052871 lncRNA downstream 214984 62424335 ~ 62489117 (+) False XLOC_025914
TCONS_00052872 lncRNA downstream 214984 62424335 ~ 62497938 (+) False XLOC_025914
TCONS_00050768 mRNA upstream 2147 62196672 ~ 62203711 (+) True XLOC_025902
TCONS_00050767 mRNA upstream 36798 62161249 ~ 62169060 (+) True XLOC_025901
TCONS_00050766 mRNA upstream 56030 62140077 ~ 62149828 (+) True XLOC_025900
TCONS_00050765 mRNA upstream 66903 62126981 ~ 62138955 (+) True XLOC_025899
TCONS_00050764 mRNA upstream 152544 62000822 ~ 62053314 (+) True XLOC_025897
TCONS_00050770 mRNA downstream 7376 62216727 ~ 62243210 (+) False XLOC_025904
TCONS_00050771 mRNA downstream 8128 62217479 ~ 62240119 (+) False XLOC_025904
TCONS_00050772 mRNA downstream 9807 62219158 ~ 62226590 (+) True XLOC_025905
TCONS_00050773 mRNA downstream 27092 62236443 ~ 62243210 (+) False XLOC_025904
TCONS_00050774 mRNA downstream 27092 62236443 ~ 62250574 (+) True XLOC_025904
TCONS_00050717 other upstream 3495103 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 4035444 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 4207299 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 4375939 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 4566410 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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