RNA id: TU1944600


Basic Information

Item Value
RNA id TU1944600
length 452
lncRNA type intronic
GC content 0.50
exon number 3
gene id G1699455
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 548316 ~ 585797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctgtctctctgtctctctgtctctctgtctctctgtctgtctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctctctctctctctctctgtctctctgtctctctctgtctctctgtctctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctgtctctctgtctctctctgtctgtctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctgtctctctctgtctctctgtctctctctgtctctctgtctctctgtctctctgtctctctctgtctctctgtctctctctgtctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944588 lncRNA upstream 4335 543265 ~ 543981 (+) True G1699452
TU1944587 lncRNA upstream 6307 540325 ~ 542009 (+) True G1699451
TU1944544 lncRNA upstream 90230 449813 ~ 458086 (+) True G1699417
TU1944596 lncRNA downstream 996 550765 ~ 551808 (+) True G1699455
TU1944601 lncRNA downstream 6961 556730 ~ 559701 (+) False G1699456
TU1944602 lncRNA downstream 6961 556730 ~ 557070 (+) False G1699456
TU1944603 lncRNA downstream 6961 556730 ~ 557571 (+) True G1699456
TU1944566 lncRNA downstream 14000 563769 ~ 566319 (+) False LOC101268929
XM_036956545.1 mRNA upstream 83742 225129 ~ 464574 (+) False LOC118942821
XM_036956544.1 mRNA upstream 83742 342657 ~ 464574 (+) False LOC118942821
XM_036956542.1 mRNA upstream 354098 60262 ~ 194218 (+) False LOC118942820
XM_036956546.1 mRNA downstream 98140 647909 ~ 710000 (+) True LOC118936449
XM_036956555.1 mRNA downstream 303262 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 606945 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 606945 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 606945 1156714 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 407067 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 532922 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 544380 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 753117 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 792730 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 988187 1537956 ~ 1538880 (+) True G1699804

Expression Profile