RNA id: TU1944602


Basic Information

Item Value
RNA id TU1944602
length 319
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1699456
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 556730 ~ 559701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacagacacagacacagacacagacacagacacagacacagagacacacacacacacagagacacacacacacacagagacacacacagagacacacacacacagagacacacacacacagagacacacacacacagagacacacacacacagagacacacacacagagacacacacacagagacacacacacacacacacacacacacacagagacacacagagacacacacacacacacagagacacacacacacacacacacacagagacacacagagacacacacacacacacacagagacacagacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944592 lncRNA upstream 4922 548316 ~ 551808 (+) False G1699455
TU1944596 lncRNA upstream 4922 550765 ~ 551808 (+) True G1699455
TU1944597 lncRNA upstream 5449 548316 ~ 551281 (+) False G1699455
TU1944595 lncRNA upstream 5449 548757 ~ 551281 (+) False G1699455
TU1944600 lncRNA upstream 6961 548316 ~ 549769 (+) False G1699455
TU1944566 lncRNA downstream 6699 563769 ~ 566319 (+) False LOC101268929
TU1944567 lncRNA downstream 6699 563769 ~ 566319 (+) False LOC101268929
TU1944569 lncRNA downstream 6699 563769 ~ 566319 (+) False LOC101268929
TU1944570 lncRNA downstream 6699 563769 ~ 566319 (+) True LOC101268929
TU1944610 lncRNA downstream 28921 585991 ~ 589388 (+) True G1699462
XM_036956545.1 mRNA upstream 92156 225129 ~ 464574 (+) False LOC118942821
XM_036956544.1 mRNA upstream 92156 342657 ~ 464574 (+) False LOC118942821
XM_036956542.1 mRNA upstream 362512 60262 ~ 194218 (+) False LOC118942820
XM_036956546.1 mRNA downstream 90839 647909 ~ 710000 (+) True LOC118936449
XM_036956555.1 mRNA downstream 295961 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 599644 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 599644 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 599644 1156714 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 415481 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 525621 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 537079 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 745816 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 785429 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 980886 1537956 ~ 1538880 (+) True G1699804

Expression Profile