RNA id: TU1944615


Basic Information

Item Value
RNA id TU1944615
length 1814
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1699463
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 626754 ~ 778190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCAACAGTGCCACCCGGAGGTAGAAGGGAGCATAGCACGGTGCACGAGCGGAACTGCCGTGTGTGTGAATGAGGACATTTTGAAAATCATTCTTATACCTTGAAATAACGTGAGAAACAAAGCAATTTCATGTGTGACAATATTTTATATATAATTTAGGTCTCATCTTTCTTCATTCTGAATTAAACACGAGATTTGATCAGGGTGCTTCAAAAACCTCATTTTCTTCAAACGGGCTCTTCTAAGACGTCTGAACGCGCTGTCAGAGTTCCTATATGTTTGTCATTAACTCATTACATATCCTGAAGAAGTTCTATATAATAGTACATATGTATCAAGTAATATAATACAATGTCTAGACATTTTCTGAACAGTGTCTCCGAGAATAACATTGAAAATAGTATTATTGAAATAACTCGAAAGCATAAGAGGGGTGAGTTGCTATAAAACCCCATCGTCTTTATTGTCGTGTTGATTGTGGTAAATACTATTATAATATGAACTAACTATACCCGAAGATAAGTATTATGGGTGATGAAATGACCCTGCTGCGTTCCTGTCAGTGTAGCCTGTAGTATAATACTGGTTCCTGCATTCATTACAGACTGGTTCATTACAGACTGGTTCATTACAGACTGGTTAATTACAGACTGGTTCATTACAGACTGTTGCAATGATGTCACTGAGAATCAAGGCTGCGACGCACTTGTGTAGTGTACAATATGAGGATTGTCCTCAACTAACCAACTGTCAATCAACGAGGGTGATCAACAACAATAAAACACTAACGTTATGTTGAACGCATCCCCAAAGACGGCATGGCTctaacctgatcccagatctgtttgttctcttGGCAACTTAACTTAttgctgtcattgtcaagccaaacatgttTTAGCGTGACAAGGAGTGACAAGTAGTTGGCATGATGGCACCAACAGACTGGTACTGCTTTGATCTAGTGGTTAATAATCCCTATTAATGTGAATACAGGCCCGAGGCCTGAGTAATTACATAAGGCACTACCTATTACCAGAGTGtgggcactagatagggaatagggttgccatttgggacgtaacccaGGTCTGGCATCTGTTGGTATGGATGAAGCACAATGATGTGGCTGTTGTTTAAACTCATGTTGGGAGaaaaaagatagaaagagagagtgagcgagagtgagcgagacagagagggagagagagagagagagagagagagagagagagagagagagagagagagtgagagagagagagagagagagagagagagagaaagtgtgtgagagagagagagagagagagagagaaagtgtgtgagagagagagcgagagagagaaagagacagacagagagagagagatagagaaagtgtgtgagagagcaagagaaagacagagagagagagagacagagagagagacagagagagagagagagacagagagagagagagagaaagagagagggggagagaaagagagagaaagagagagggggagagaaagagagagagagagagacagagagagagagagagagagagagagacagagacagagagagagagagacagagcgttgCCCCTTGAAGTGGGCTTGGATGAATCTCCTCTATTCTGCCTTGTTATTTAATTTTACCGTCCATTAATTTATTCTATATTTTattctatatttatttatttacctctCTGTCGTTTTTTCTAAGATTGTTATAATGAAACTATAAGGGATGATACTAAAATGCTTCTTTATTTTTTGCTGAAGATAACAAGCTGTTTGAAATAACATTTgtgggcatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944655 lncRNA upstream 37515 671084 ~ 674195 (+) True G1699488
TU1944610 lncRNA upstream 122322 585991 ~ 589388 (+) True G1699462
TU1944566 lncRNA upstream 145391 563769 ~ 566319 (+) False LOC101268929
TU1944682 lncRNA downstream 14685 728434 ~ 729118 (+) True G1699510
TU1944685 lncRNA downstream 24318 738067 ~ 743248 (+) True G1699513
TU1944697 lncRNA downstream 66023 779772 ~ 781362 (+) True G1699523
TU1944707 lncRNA downstream 86900 800649 ~ 802742 (+) False G1699532
TU1944708 lncRNA downstream 88313 802062 ~ 802742 (+) True G1699532
XM_036956546.1 mRNA upstream 1710 647909 ~ 710000 (+) True LOC118936449
XM_036956490.1 mRNA upstream 145388 479755 ~ 566322 (+) False LOC101268929
XR_005038429.1 mRNA upstream 145388 479755 ~ 566322 (+) False LOC101268929
XR_005038430.1 mRNA upstream 145388 479755 ~ 566322 (+) False LOC101268929
XM_036956491.1 mRNA upstream 145388 479946 ~ 566322 (+) False LOC101268929
XM_036956555.1 mRNA downstream 139282 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 442965 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 442965 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 442965 1156714 ~ 1305903 (+) False LOC110518351
XM_036956553.1 mRNA downstream 462952 1176701 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 570461 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 368942 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 380400 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 589137 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 628750 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 824207 1537956 ~ 1538880 (+) True G1699804

Expression Profile