RNA id: TU1945966


Basic Information

Item Value
RNA id TU1945966
length 387
lncRNA type read_through
GC content 0.52
exon number 2
gene id G1700453
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 686884 ~ 687473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccctgttctgtagtgctgataacacacagccctgttctgtagtgctaataacacacagccctgttctgtagtgctgataacacacagccctgttctgtagtgctgataaGTCAACAGCTGTAAACGATAATGATCTGAACAGCAAGGTGTGTATCAGCTCCCAGCAGCTCCGGTTGTCCTACTTGTTCTTCCTTCAGCATCGCATGACACACACCCACTGCCGTGATGCACCGTGATGCAGCCTTCTGACTGTGTGGGTTTAGAGGTGGTACCACTGCTAGTACTGTGATGGTGATGgtacacaggagaggagagggagagaggagaggcagatgagaagaggagaggagaggcagaagagaggaggagaggaggaggagaggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945955 lncRNA downstream 10282 676109 ~ 676602 (-) True G1700445
TU1945953 lncRNA downstream 10892 674535 ~ 675992 (-) True G1700444
TU1945874 lncRNA downstream 89209 581385 ~ 597675 (-) False LOC118942823
TU1945882 lncRNA downstream 97990 587584 ~ 588894 (-) True G1700393
TU1945870 lncRNA downstream 103583 581385 ~ 583301 (-) False LOC118942823
TU1945972 lncRNA upstream 13062 700535 ~ 700900 (-) True G1700459
TU1945976 lncRNA upstream 16460 703933 ~ 704613 (-) True G1700461
TU1945962 lncRNA upstream 24213 711686 ~ 713813 (-) False G1700451
TU1945963 lncRNA upstream 24213 711686 ~ 713813 (-) True G1700451
TU1945978 lncRNA upstream 33683 721156 ~ 721476 (-) True G1700463
XR_005038452.1 mRNA downstream 103867 581374 ~ 583017 (-) False LOC118942823
XM_036956543.1 mRNA downstream 337899 345973 ~ 348985 (-) True LOC110517722
XR_005038451.1 mRNA downstream 421249 261114 ~ 265635 (-) False LOC118942822
XM_036956548.1 mRNA upstream 137117 824590 ~ 851763 (-) False LOC110516566
XM_036956547.1 mRNA upstream 137117 824590 ~ 851764 (-) False LOC110516566
XM_036956549.1 mRNA upstream 137117 824590 ~ 851766 (-) False LOC110516566
XM_036956557.1 mRNA upstream 631748 1319221 ~ 1347903 (-) False LOC110511372
XM_036956556.1 mRNA upstream 631748 1319221 ~ 1348497 (-) False LOC110511372
TU1945775 other downstream 332375 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 631754 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 681676 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1435056 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1500960 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1885201 2572674 ~ 2575261 (-) False G1701824

Expression Profile