RNA id: TU1944682



Basic Information


Item Value
RNA id TU1944682
length 587
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1699510
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 728434 ~ 729118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagttgagccaatggccatgaggtaaattgagccaatggccatgaggtaagttgagccaatggccatgaggtaaattgagccaatggccatgaggtaagttgagccaatggccatgaggtaagttgagccaatgtaagtgttttcttcccaggcgtaATGCAAGGTACTATctctgggatatgaggtaacaacagggcctgggTTAAAAGTGATTACAAATcacaaagtgtttgttaggtaTGAAGCCTGTGTTAAAAGAGCCATAAAAAGACCCCCCAAAAAAAGCAATTGTGACGAATTGTGTTTAAGAAATAAAGATAAGACATGGTTTTAAAATGGTAGTGGTAATATTCTGTACAGACATTTGTAGGtggcttaatttaccctgtcctGCAGACAAGATATGTTTACTGTAACTTTACTTTCCTATgacagagtgatgctgaatgtaaagaATGTCTCAtcttaccccactctcctctactgTATTGGACAACCTAGATGCCCtgaccagaggaggctgctgaggggaggacgactcataataatggctggaaggagcgaatggaatggcctcaaacacatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1944615 lncRNA upstream 14685 711710 ~ 713749 (+) False G1699463
TU1944617 lncRNA upstream 14685 711710 ~ 713749 (+) False G1699463
TU1944618 lncRNA upstream 14685 711710 ~ 713749 (+) False G1699463
TU1944619 lncRNA upstream 14685 711710 ~ 713749 (+) False G1699463
TU1944655 lncRNA upstream 54239 671084 ~ 674195 (+) True G1699488
TU1944685 lncRNA downstream 8949 738067 ~ 743248 (+) True G1699513
TU1944697 lncRNA downstream 50654 779772 ~ 781362 (+) True G1699523
TU1944707 lncRNA downstream 71531 800649 ~ 802742 (+) False G1699532
TU1944708 lncRNA downstream 72944 802062 ~ 802742 (+) True G1699532
TU1944710 lncRNA downstream 79916 809034 ~ 809603 (+) True G1699534
XM_036956546.1 mRNA upstream 18434 647909 ~ 710000 (+) True LOC118936449
XR_005038429.1 mRNA upstream 162112 479755 ~ 566322 (+) False LOC101268929
XM_036956555.1 mRNA downstream 123913 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 427596 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 427596 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 427596 1156714 ~ 1305903 (+) False LOC110518351
XM_036956553.1 mRNA downstream 447583 1176701 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 587185 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 353573 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 365031 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 573768 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 613381 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 808838 1537956 ~ 1538880 (+) True G1699804

Expression Profile