RNA id: TCONS_00050771


Basic Information

Item Value
RNA id TCONS_00050771
length 1664
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_025904
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62207834 ~ 62250574 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGGCGCTCAGTGTGAGGCGGAGAGTGCAGAGCTTTGCTGTTTGCTGTTGAATTGCTTTAACTCCACTTCTGTTTCGGGTGTTGTGCGTCTATTCAAAGCTCCAGtgaagagtttattgaaggacagcgagaacatgagtgatccagaaccctgcagaattaaacatgaAGACACTGAACAACAAATAGacctaattgaagagaataagGTTAAAGAGGAAGAACATCATGTCAAAGTTGAGGACAAAAGTAATTTACAGACTGACGGTAATaagataaagaaaaagaaaaacaagaattgtttcatctgcactcagtgtggacaGTGTTGTGAAGGAAAAGCCAATCTTctgattcacatgaggatccacactggagagaaaccgttcacatgcacccagtgtgggaagCGTTTCAGCCGACTAGCACatcttaatcaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtaagAAGAGTTTCAGCAGCTCATCGAACCTTAAcatacacatgatgatccacactggagagagaccgttCATATGCAcccaatgtgggaagagtttcacccacttatcaaaccttaatcaacacatgaggatccacactggagagaaaccgttcacttGCACTCATTGTGGGAAGGGTTTCATACAGTCctcaaaccttaatcaacacatgatgatccacactggagagagaccgttcatgtgcactcagtgtgggaagggtTTCAGGCAATCATCgcactttaatctacacatgaagATCCACGGTGGTGTGAAAGAGTTCATGTGCTTGGAGTGCGAGGACACTTTTACTACAGCTGGAgaattgaaactgcaccagagcattcacactggagagaaacctgaGGCGTGATCAGTGTCTATACAGAGGTTCTGTCATTCAGCACAGCTTACAGGAACAAGTGGACATAAAGCTGCACACATGACGTAAATACAGCAAACACTCTCTCATGTAAGAGGATgcttcatgtctgaataatgtttgaaaaggctgagtgacggtatactgttttccaacactctaCACTGCAGtgggtggggttgtaaatgtgttgcgctGCTCACATGCACAGCTAAACACAATGATGGcggctgagagaagaacagtttcataaacatcctGCAAACAGCACCTCTCCTCTTCACATGGTTTTCTATTAGCTGTGGACAGACACTGAGTGGTGCAGATGTGTGCAAACTCATAGAAAAGATGTGGCGTGACGAGGTGGGCTTCTGGATTTGGTGTGTGCCTCCATCCGAGTCTTTAAAATCGTATCAGGTGCGGATATATCTGTACAGCTCTGCTGCTCCACTCTCCAGTGTGTTCATGTGGCTAGTGTTGCTGTCTGACCCCCTGAATGAGAAGCAAATCAATGGAAAACCGCACATCAATGAAGGCAGAGCTCCAGGAGACACCCACTGGTTGCATAATTGACAATGGTAGCTCAAAGGTGTTTAGGAGCCAAAACCAAGCTGTTTCCAACTGCTTAAATGAACTCAAGAAGAACGTTATTTCAGCCAGAGTTTGGTTTGCAGTATACCAACGCCTTAAGTTTGGAAATCCTATTAATTAGTCTTGTGTATTTGCTTCTTTTATTGATAAAGTTTCCTTACTTTC

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000175012

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052868 lncRNA upstream 155641 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00052397 lncRNA downstream 63923 62304042 ~ 62306549 (+) True XLOC_025908
TCONS_00052870 lncRNA downstream 128605 62368724 ~ 62384693 (+) True XLOC_025913
TCONS_00052871 lncRNA downstream 184216 62424335 ~ 62489117 (+) False XLOC_025914
TCONS_00052872 lncRNA downstream 184216 62424335 ~ 62497938 (+) False XLOC_025914
TCONS_00052873 lncRNA downstream 184290 62424409 ~ 62489117 (+) False XLOC_025914
TCONS_00050769 mRNA upstream 8128 62205858 ~ 62209351 (+) True XLOC_025903
TCONS_00050768 mRNA upstream 13768 62196672 ~ 62203711 (+) True XLOC_025902
TCONS_00050767 mRNA upstream 48419 62161249 ~ 62169060 (+) True XLOC_025901
TCONS_00050766 mRNA upstream 67651 62140077 ~ 62149828 (+) True XLOC_025900
TCONS_00050765 mRNA upstream 78524 62126981 ~ 62138955 (+) True XLOC_025899
TCONS_00050775 mRNA downstream 31201 62271320 ~ 62276177 (+) True XLOC_025906
TCONS_00050776 mRNA downstream 49905 62290024 ~ 62297374 (+) True XLOC_025907
TCONS_00050777 mRNA downstream 77871 62317990 ~ 62324799 (+) True XLOC_025909
TCONS_00050778 mRNA downstream 87213 62327332 ~ 62329712 (+) True XLOC_025910
TCONS_00050779 mRNA downstream 99145 62339264 ~ 62346128 (+) True XLOC_025911
TCONS_00050717 other upstream 3506724 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 4047065 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 4218920 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 4387560 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 4578031 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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