RNA id: TU1944707


Basic Information

Item Value
RNA id TU1944707
length 261
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G1699532
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 800649 ~ 802742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccattcaacatccacagtctccattcaacaaACACAGTCTCCATCCacaaACACAGTCTCAATTCAACATCCACAAacacagtctccattcaacatccacagtctccattcaacaaacacagtctccattcaacACCCACAAACAGCAGTGATCATACAAATTGTTATCTTGCTGCCCTTCTCTCTTTGATTGGGCTGAGCTCACCCTGTAGGGaagcccctccacacacacaaacagagaaacCCAGGCTAccaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944697 lncRNA upstream 19287 779772 ~ 781362 (+) True G1699523
TU1944621 lncRNA upstream 22459 626754 ~ 778190 (+) False G1699463
TU1944620 lncRNA upstream 22504 711710 ~ 778145 (+) True G1699463
TU1944685 lncRNA upstream 57401 738067 ~ 743248 (+) True G1699513
TU1944682 lncRNA upstream 71531 728434 ~ 729118 (+) True G1699510
TU1944710 lncRNA downstream 6292 809034 ~ 809603 (+) True G1699534
TU1944723 lncRNA downstream 18263 821005 ~ 821238 (+) True G1699539
TU1944791 lncRNA downstream 65628 868370 ~ 929611 (+) True G1699565
TU1944794 lncRNA downstream 70335 873077 ~ 879296 (+) True G1699568
TU1944806 lncRNA downstream 89493 892235 ~ 893040 (+) True G1699577
XM_036956546.1 mRNA upstream 90649 647909 ~ 710000 (+) True LOC118936449
XR_005038429.1 mRNA upstream 234327 479755 ~ 566322 (+) False LOC101268929
XM_036956555.1 mRNA downstream 50289 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 353972 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 353972 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 353972 1156714 ~ 1305903 (+) False LOC110518351
XM_036956553.1 mRNA downstream 373959 1176701 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 659400 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 279949 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 291407 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 500144 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 539757 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 735214 1537956 ~ 1538880 (+) True G1699804

Expression Profile