RNA id: TU1944723


Basic Information

Item Value
RNA id TU1944723
length 234
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1699539
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 821005 ~ 821238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATAGAATAGACTAAAATAATGGACAGGTCATTGTTCCCATCTCAGCTGTTTCTATCTGATTTGTTGTATGTTGTTTCCCGTTAGGTTAGTGGCACTTCTCTCTTCCCGACTCATTTGAAGTCCTGATAAGGAGTCTAACCAGGAAAGCAAgagaaaaaggaaaaaaaaagagTCACTCACCTGTCTGTCAATCCACAGGTTAACTATCGAATCACAGTCCATCTCTGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944710 lncRNA upstream 11402 809034 ~ 809603 (+) True G1699534
TU1944707 lncRNA upstream 18263 800649 ~ 802742 (+) False G1699532
TU1944708 lncRNA upstream 18263 802062 ~ 802742 (+) True G1699532
TU1944697 lncRNA upstream 39643 779772 ~ 781362 (+) True G1699523
TU1944685 lncRNA upstream 77757 738067 ~ 743248 (+) True G1699513
TU1944791 lncRNA downstream 47132 868370 ~ 929611 (+) True G1699565
TU1944794 lncRNA downstream 51839 873077 ~ 879296 (+) True G1699568
TU1944806 lncRNA downstream 70997 892235 ~ 893040 (+) True G1699577
TU1944834 lncRNA downstream 111709 932947 ~ 934038 (+) True G1699593
TU1944844 lncRNA downstream 129649 950887 ~ 951687 (+) True G1699601
XM_036956546.1 mRNA upstream 111005 647909 ~ 710000 (+) True LOC118936449
XR_005038429.1 mRNA upstream 254683 479755 ~ 566322 (+) False LOC101268929
XM_036956555.1 mRNA downstream 31793 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 335476 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 335476 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 335476 1156714 ~ 1305903 (+) False LOC110518351
XM_036956553.1 mRNA downstream 355463 1176701 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 679756 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 261453 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 272911 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 481648 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 521261 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 716718 1537956 ~ 1538880 (+) True G1699804

Expression Profile