RNA id: TU1946046


Basic Information

Item Value
RNA id TU1946046
length 3173
lncRNA type intronic
GC content 0.35
exon number 2
gene id G1700522
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 875044 ~ 878302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtaagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgtcacggagaggtttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtaagagtagaataaacccatagtaatgttagtaagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtaagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtaagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtaatgttatggagaggtttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtaagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgttatggagaggtttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccacagtagtgttagtgagagtagaataaacccatagaaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtaagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccgtagtaatgtcatggagaggtttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgttatggagaggtttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaccccatagtagtgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaccCCATAGTAATGTtatggagaggtttagtgagagtagaataaacccatagtaatgttaTGGAGAgctttagtgagagtagaataaacccatagtaatgtcatggagaggtttagtgagagtagaataaacccatagtagtgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaacccatagtaatgttagtgagagtagaataaccccatagtagtgttagtgagagtagaataaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946015 lncRNA downstream 23336 848270 ~ 851708 (-) True LOC110516566
TU1946003 lncRNA downstream 25847 824596 ~ 849197 (-) False LOC110516566
TU1946017 lncRNA downstream 42500 832019 ~ 832544 (-) True G1700500
TU1945997 lncRNA downstream 76681 789228 ~ 798363 (-) True G1700482
TU1945978 lncRNA downstream 153568 721156 ~ 721476 (-) True G1700463
TU1946058 lncRNA upstream 21469 899771 ~ 900130 (-) True G1700534
TU1946102 lncRNA upstream 103216 981518 ~ 982350 (-) True G1700572
TU1946117 lncRNA upstream 139027 1017329 ~ 1018993 (-) True G1700582
TU1946118 lncRNA upstream 141368 1019670 ~ 1021731 (-) True G1700583
TU1946119 lncRNA upstream 143614 1021916 ~ 1024151 (-) True G1700584
XM_036956549.1 mRNA downstream 23278 824590 ~ 851766 (-) False LOC110516566
XM_036956547.1 mRNA downstream 23280 824590 ~ 851764 (-) False LOC110516566
XM_036956548.1 mRNA downstream 23281 824590 ~ 851763 (-) False LOC110516566
XM_036958447.1 mRNA downstream 89670 585735 ~ 785374 (-) True cacna2d4a
XR_005038452.1 mRNA downstream 292027 581374 ~ 583017 (-) False LOC118942823
XM_036956557.1 mRNA upstream 440919 1319221 ~ 1347903 (-) False LOC110511372
XM_036956556.1 mRNA upstream 440919 1319221 ~ 1348497 (-) False LOC110511372
XM_036956561.1 mRNA upstream 470297 1348599 ~ 1354980 (-) False LOC110527029
XM_036956558.1 mRNA upstream 470297 1348599 ~ 1357031 (-) False LOC110527029
XM_036956559.1 mRNA upstream 470297 1348599 ~ 1357031 (-) False LOC110527029
TU1945775 other downstream 520535 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 440925 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 490847 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1244227 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1310131 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1694372 2572674 ~ 2575261 (-) False G1701824

Expression Profile