RNA id: TCONS_00052869


Basic Information

Item Value
RNA id TCONS_00052869
length 1591
lncRNA type sense_over
GC content 0.45
exon number 3
gene id XLOC_025904
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62207834 ~ 62250574 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGGATCAGTGGTTCAACCATAGGCTGGCTTCTCCTCTCCAGCATAGACTTTTCCAGGGAGAAACACACCCTCTGGTCCCCCTTTTTTTAGAATAGGAACCACTACCCCAGTTGCGTAGTCTAGAGGTGCTGTCCCCTAACTTAACGTAGAAGCATGTTAGACAAGGTTTGCTAGAATCCCTTTGAGGCTGACCAGTAGTCGTCTCGCATGGTCTATAACTCGCCACCATCCAACTCCCCACCAGGTGGTGATCAATTGACAGCTTTGTCCTTTTTCTACACAAGTGTCCAAGATATACAATCAGAGATCAGATGAAACAATCACAAGGACTATAATTGAGCTCTGGCCTTGTGTGTGCCATGTGCACTGATGGACACTCTCATGCTCAAACATGGTGTTTGTTGCGGACTAACTGACTAGCGCAAAAGTCCAACACAACCCTATTCAGATTCAGATCTGGGAGACCATTCCGCAACCCAAATGTACAGGCAAGTGACCTTCTCGTTCAGCTGGGACAGTTCCACCCCATGGCAGCTAAGTTGGGGAGCTATAAGCAAGCTCACACCAGCCCACTGCCTCTCACTGTGGGCAACTCCAGACTAGAAGAAATTTCAGCCTTTCTTAAGAAGTTCAGTTCCAGAGCCTAAACTGTGTGTGGAAGTGAGCTTGACTATCTTTAGTTGATACTGTTCAACCTCCCGCACAAGCTCAGACATTTATCCCTTCCTGTGAGGTGACATTCCATGTCCCAAGAGCCACTTTTATGTCTAATGAGCAGGTTGTCATGGTCCTTGCTATTTGACCACCACCTATTACACATTGCACTGGCTCCTTACGGCAGTGGGCCTGCAGAAAGATAGTCCCATGTCACTTCTTCAGGTTGAGTCTGGCTGGGTTTGTGGAATAAACATGGCCACCATATGCTCGCATACAAGTCCAAACCCCTGGCCTGGCTCCATGGTGAGGCCTTAACTGTGCTGTATTGGCTAACATCATGATCCCTAATTTTATAGGGGGTATTTGACCCTGCATTTAGTCTGACCTGTCACCTAAGACCTTTTGCCTTGGGAGATCCTACAAGGGGGATCTAGCCCCTGAAAACTACCCCCTAAAGGATCACTCAAGCAGGTAAGAAAGCAGGTAAATTGGAACCTTTTGGAAGGTGTGCATCCTGTTACATCTGGGATAAAGTCAGTCCAGACCTAAAACTGATCGAGAGGCTGTGGAATAACCTCAAACTTCATTAATGCTCTGACACGGCTTAATTAAAATCATTCTGCAGAGATGAGTGGTCCACAATTCCTCCACAGAGATGTGAAACACTAGTCGGATAACTTGCCAAATGGTAGCACAATCAGATATTAGATTTAGAGGGCATTTACTCTTTCACATGTGGCCAAGGCAGGTTTGGATGTTTAGTCCTTAATAAATCAGattattttaaagcagttttgtgtTTACTCTGGTTTTCTTAgttttttgactgtttgctgccatctagtgtctgaataatgcagaGGTAAGTGTAAAAAGGGTTTCTGGtttgtaaatattcatttatctatttttgttaataattaagaaagtta

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052868 lncRNA upstream 166672 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00052397 lncRNA downstream 62126 62304042 ~ 62306549 (+) True XLOC_025908
TCONS_00052870 lncRNA downstream 126808 62368724 ~ 62384693 (+) True XLOC_025913
TCONS_00052871 lncRNA downstream 182419 62424335 ~ 62489117 (+) False XLOC_025914
TCONS_00052872 lncRNA downstream 182419 62424335 ~ 62497938 (+) False XLOC_025914
TCONS_00052873 lncRNA downstream 182493 62424409 ~ 62489117 (+) False XLOC_025914
TCONS_00050772 mRNA upstream 1920 62219158 ~ 62226590 (+) True XLOC_025905
TCONS_00050769 mRNA upstream 19159 62205858 ~ 62209351 (+) True XLOC_025903
TCONS_00050768 mRNA upstream 24799 62196672 ~ 62203711 (+) True XLOC_025902
TCONS_00050767 mRNA upstream 59450 62161249 ~ 62169060 (+) True XLOC_025901
TCONS_00050766 mRNA upstream 78682 62140077 ~ 62149828 (+) True XLOC_025900
TCONS_00050775 mRNA downstream 29404 62271320 ~ 62276177 (+) True XLOC_025906
TCONS_00050776 mRNA downstream 48108 62290024 ~ 62297374 (+) True XLOC_025907
TCONS_00050777 mRNA downstream 76074 62317990 ~ 62324799 (+) True XLOC_025909
TCONS_00050778 mRNA downstream 85416 62327332 ~ 62329712 (+) True XLOC_025910
TCONS_00050779 mRNA downstream 97348 62339264 ~ 62346128 (+) True XLOC_025911
TCONS_00050717 other upstream 3517755 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 4058096 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 4229951 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 4398591 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 4589062 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

//