RNA id: TU1944834


Basic Information

Item Value
RNA id TU1944834
length 252
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1699593
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 932947 ~ 934038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccaccacagagagacatgcagttttaatctaccacagagagccatgcagttttaatctaccgcagagagccatgcagttttaatctaccgcagagagccatgcagttttaatctaccacagagagccatgcagttttaatctaccacagagagccatgcagtgttaaaccaccacagagacatgcagttttaaaccaccacagagagccatgcagttttaaaccaccacagagagacatgcagttttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944791 lncRNA upstream 3336 868370 ~ 929611 (+) True G1699565
TU1944806 lncRNA upstream 39907 892235 ~ 893040 (+) True G1699577
TU1944794 lncRNA upstream 53651 873077 ~ 879296 (+) True G1699568
TU1944723 lncRNA upstream 111709 821005 ~ 821238 (+) True G1699539
TU1944710 lncRNA upstream 123344 809034 ~ 809603 (+) True G1699534
TU1944844 lncRNA downstream 16849 950887 ~ 951687 (+) True G1699601
TU1944862 lncRNA downstream 47468 981506 ~ 982356 (+) True G1699615
TU1944863 lncRNA downstream 48955 982993 ~ 983249 (+) True G1699616
TU1944872 lncRNA downstream 82102 1016140 ~ 1016467 (+) True G1699625
TU1944886 lncRNA downstream 113421 1047459 ~ 1048172 (+) True G1699632
XM_036956546.1 mRNA upstream 222947 647909 ~ 710000 (+) True LOC118936449
XR_005038429.1 mRNA upstream 366625 479755 ~ 566322 (+) False LOC101268929
XM_036956550.1 mRNA downstream 222676 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 222676 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 222676 1156714 ~ 1305903 (+) False LOC110518351
XM_036956553.1 mRNA downstream 242663 1176701 ~ 1305903 (+) False LOC110518351
XM_036956554.1 mRNA downstream 294105 1228143 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 791698 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 148653 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 160111 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 368848 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 408461 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 603918 1537956 ~ 1538880 (+) True G1699804

Expression Profile