RNA id: TU1944862



Basic Information


Item Value
RNA id TU1944862
length 459
lncRNA type intronic
GC content 0.31
exon number 2
gene id G1699615
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 981506 ~ 982356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atatagtgatggtgtgaactggtttattatatatagtgatggtgtgaactggtttattatatatagtgatggtgtgaactggtttattatatatagtggtggtgtgaactggtttattatatatagtgatggtgtgaactggtttattatatatagtgatggtgtgaactggtttattatatatagtggtggtgtgaactggtttattatatatagtgatggtgtgaaCTGGTTTATTATATATAGTGGTGGTGTCAACTGGTTTATTATATATAGTGGTGGTGTGAACTGGTTTATtatatatagtgatggtgtgaactggtttattatatagtgatggtgtgaactggtttattatatatagtggtggtgtgaactggtttattatatatagtgatggtgtgaactggtttattatatatagtgatggtgtgaactggtttattatatatagtgatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1944844 lncRNA upstream 29819 950887 ~ 951687 (+) True G1699601
TU1944834 lncRNA upstream 47468 932947 ~ 934038 (+) True G1699593
TU1944791 lncRNA upstream 51895 868370 ~ 929611 (+) True G1699565
TU1944806 lncRNA upstream 88466 892235 ~ 893040 (+) True G1699577
TU1944794 lncRNA upstream 102210 873077 ~ 879296 (+) True G1699568
TU1944863 lncRNA downstream 637 982993 ~ 983249 (+) True G1699616
TU1944872 lncRNA downstream 33784 1016140 ~ 1016467 (+) True G1699625
TU1944886 lncRNA downstream 65103 1047459 ~ 1048172 (+) True G1699632
TU1944898 lncRNA downstream 82320 1064676 ~ 1068643 (+) True G1699643
TU1944909 lncRNA downstream 104707 1087063 ~ 1087617 (+) True G1699652
XM_036956546.1 mRNA upstream 271506 647909 ~ 710000 (+) True LOC118936449
XR_005038429.1 mRNA upstream 415184 479755 ~ 566322 (+) False LOC101268929
XM_036956550.1 mRNA downstream 174358 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 174358 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 174358 1156714 ~ 1305903 (+) False LOC110518351
XM_036956553.1 mRNA downstream 194345 1176701 ~ 1305903 (+) False LOC110518351
XM_036956554.1 mRNA downstream 245787 1228143 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 840257 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 100335 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 111793 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 320530 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 360143 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 555600 1537956 ~ 1538880 (+) True G1699804

Expression Profile