RNA id: TU1944872


Basic Information

Item Value
RNA id TU1944872
length 208
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G1699625
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1016140 ~ 1016467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCACTTCAAATGACttgagagggaaacagagagagagagactgagagagacagacagagagtttaCACATTTCACTTCAAATGACTTGAGCAAGTTTATTTGTAATGGCATGTGGAGACAGTGCCAGGCATCGAGCAggacctctccctccATCTCCCCTCAATCTCCCCCACATCTCCCCTCAATCTCCCCTCAATCTCCCCc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944863 lncRNA upstream 32891 982993 ~ 983249 (+) True G1699616
TU1944862 lncRNA upstream 33784 981506 ~ 982356 (+) True G1699615
TU1944844 lncRNA upstream 64453 950887 ~ 951687 (+) True G1699601
TU1944834 lncRNA upstream 82102 932947 ~ 934038 (+) True G1699593
TU1944806 lncRNA upstream 123100 892235 ~ 893040 (+) True G1699577
TU1944886 lncRNA downstream 30992 1047459 ~ 1048172 (+) True G1699632
TU1944898 lncRNA downstream 48209 1064676 ~ 1068643 (+) True G1699643
TU1944909 lncRNA downstream 70596 1087063 ~ 1087617 (+) True G1699652
TU1944919 lncRNA downstream 85459 1101926 ~ 1124073 (+) True G1699659
TU1944958 lncRNA downstream 188621 1205088 ~ 1206679 (+) False G1699693
XM_036956555.1 mRNA upstream 16576 853031 ~ 999564 (+) True LOC118942824
XM_036956546.1 mRNA upstream 306140 647909 ~ 710000 (+) True LOC118936449
XR_005038429.1 mRNA upstream 449818 479755 ~ 566322 (+) False LOC101268929
XM_036956550.1 mRNA downstream 140247 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 140247 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 140247 1156714 ~ 1305903 (+) False LOC110518351
XM_036956553.1 mRNA downstream 160234 1176701 ~ 1305903 (+) False LOC110518351
XM_036956554.1 mRNA downstream 211676 1228143 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 874891 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 66224 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 77682 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 286419 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 326032 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 521489 1537956 ~ 1538880 (+) True G1699804

Expression Profile