RNA id: TU1944898


Basic Information

Item Value
RNA id TU1944898
length 1450
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1699643
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1064676 ~ 1068643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAAATTAAGTCAAATTCAATTTGCTGTTCAGTAATATCCTCAGATCACTGTGATGTAGGCCTTCTGTCAAGGCTTCTGTAGGGTGATtgaaacctctctctccattcctatctctctatctccctccatatccacctctctctcttcattcatctctctctttcactccccccctctctctctctctggggcatAAGTGCTGAGCTACAGTGATGACCTTTCTCACACTGACACCCACAAACTTAAcacaacacactataacacacaccagaATAACCCTCATACATAATGACCCCACCCCAGAATAACCCTCATATATAATGACCCTACCCCAGAATAACCCCTCATATGTAATgaccccacactataacacacaccagaataacccctcatatataatgaccccacactataacacacaccagaataacccctcatatataatgaccccacactataacacacaccagaataacccctcatatataatgacCCCACACCAGAATAACCCCTCATATATAATgaccccacactataacacacaccagaATAACCCTCATATATACTGACcctacactataacacacaccagaataaccctcatatataatgaccccacactataacacacaccagaATAACCCTCATATTAATgaccccacactataacacacaccagaataaccctcatatataatgaccccacactataacacacaccagaataacccctcatatataatgaccccacactataacacacaccagaATAACCCTCATATATACTGACcctacactataacacacaccagaataaccctcatatataatgaccccacactataacacacccCAGAATAACCCCTCATATATAATgaccccacactataacacacaccagaataacccctcatatataatgaccccacactataacacacaccagaataaccatcatatataatgaccccacactataacacacaccagaataaccctcatatataatgaccccacactataacacacaccagaataaccctcatatataatgaccccacactataacacacaccagaataaccctcatatataatgaccccacactataacacacaccagaataaccctcatatataatgaccccacactataacacacaccagaataacccctcatatataatgaccccacactataacacacaccagaataaccctcatatataatgaccccacactataacacacaccagaataaccctcatatataatgaccccacactataacacacaccagaataacccctcatatataatgaccccacactataacacacaccagaataacccctcatatataatgaccccacattataacacactgtatttctCACAACGCTGGAGTCCAGTCATGTTTAGAAAACAGTTAAAATTATTGAATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944886 lncRNA upstream 16504 1047459 ~ 1048172 (+) True G1699632
TU1944872 lncRNA upstream 48209 1016140 ~ 1016467 (+) True G1699625
TU1944863 lncRNA upstream 81427 982993 ~ 983249 (+) True G1699616
TU1944862 lncRNA upstream 82320 981506 ~ 982356 (+) True G1699615
TU1944844 lncRNA upstream 112989 950887 ~ 951687 (+) True G1699601
TU1944909 lncRNA downstream 18420 1087063 ~ 1087617 (+) True G1699652
TU1944919 lncRNA downstream 33283 1101926 ~ 1124073 (+) True G1699659
TU1944958 lncRNA downstream 136445 1205088 ~ 1206679 (+) False G1699693
TU1944959 lncRNA downstream 137128 1205771 ~ 1206831 (+) True G1699693
TU1944766 lncRNA downstream 233759 1302402 ~ 1302777 (+) False LOC110518351
XM_036956555.1 mRNA upstream 65112 853031 ~ 999564 (+) True LOC118942824
XM_036956546.1 mRNA upstream 354676 647909 ~ 710000 (+) True LOC118936449
XR_005038430.1 mRNA upstream 498354 479755 ~ 566322 (+) False LOC101268929
XM_036956550.1 mRNA downstream 88071 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 88071 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 88071 1156714 ~ 1305903 (+) False LOC110518351
XM_036956553.1 mRNA downstream 108058 1176701 ~ 1305903 (+) False LOC110518351
XM_036956554.1 mRNA downstream 159500 1228143 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 923427 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 14048 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 25506 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 234243 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 273856 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 469313 1537956 ~ 1538880 (+) True G1699804

Expression Profile