RNA id: TU1946148


Basic Information

Item Value
RNA id TU1946148
length 2518
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1700612
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1098247 ~ 1103848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccactgtctCATCACAGTTCACAACCCTCTAACaaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgccccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgccccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcacaccactgtcccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagccaagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgatcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacagttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacacttaacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgccccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgccccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagtatgctgctcagaccactgtcccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcattctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgcctctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagAATGCTGCTCAGACCActgtcccatcacaaccCTCTAACTGGTGACcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccaGAATAGTTCATGACACTTGATTGTAAAAGCGTCGTTGTTTAACTGTGATTTAGTTACTATTAACCTGTTAActagttgtttctgttttaaccttaaccactcagaattaaTACCTAACCTGTTAACTAGTTAActagttgtttctgttttaaccatgtaaccatgcagaattaataCCTAAACTATTAACCTGTTAActagttgtttctgttttaaccttaaccactcaTAATTAATACCTAAACTATTAACCTGTTAActagttgtttctgttttaaccatgtaaccatgcagaattaataCCTAAACTATTAACCTGTTAACTAGTTGTTTCTGTgttaaccttaaccactcagaatgaatacctaaactattaactagttaactagttgtttctgttttaaccatgtaaccatgcagaatgaatacctaaactattAACCTGTTAActagttgtttctgttttaaccttaaccactcagaatgaatacctaaactattAACCTGTTAACTAGTTGTTCCTGttttaaccttaaccactcagaattaaTACCTAAACTATTAACCTGTTAActagttgtttctgttttaaccttaaccactcagaattaaTACCTAAACTATTAACCTGTTAACTAGTTGTTCCTGttttaaccttaaccactcagaattaaTACCTAAACTATTAACCTGTTAActagttgtttctgttttaatcctgtaaccatgcagaattaatgCGTCAAAAATAGAAGGGTAACTATCTTGTTGCACAAACACaggcacacgcgcgcacacacactctccttctctgtcactgctgcctctctctgactgtgtgtctgagcCCCCCAGAGAAGGAGCCAGCGTGCCCAATCCAGGCCCTGGAACTAGGTCAGCCTCCAGAACAGTGTacactgctcctctcctctctctatccctctatcctctcctctcctctatccctctatcctctcctctctctatcctctcatctcctttatccctctatcctctcatctcctttaTCCATCTCTTCTTGTCTCTTTACTTctgcctgtcctctcctcctccattcaccgtctctcttctcctctatctatcctcagtccatccatctcttctcttttatcttctctgctctcttctatctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946146 lncRNA downstream 8026 1089848 ~ 1090221 (-) True G1700610
TU1946097 lncRNA downstream 63847 1033682 ~ 1034400 (-) True G1700569
TU1946119 lncRNA downstream 74096 1021916 ~ 1024151 (-) True G1700584
TU1946118 lncRNA downstream 76516 1019670 ~ 1021731 (-) True G1700583
TU1946117 lncRNA downstream 79254 1017329 ~ 1018993 (-) True G1700582
TU1946158 lncRNA upstream 20726 1124574 ~ 1137671 (-) True G1700621
TU1946204 lncRNA upstream 101297 1205145 ~ 1205665 (-) True G1700658
TU1946248 lncRNA upstream 177237 1281085 ~ 1283069 (-) True G1700697
TU1946282 lncRNA upstream 209108 1312956 ~ 1315950 (-) True G1700712
TU1946296 lncRNA upstream 253716 1357564 ~ 1359274 (-) False G1700726
XM_036956549.1 mRNA downstream 246481 824590 ~ 851766 (-) False LOC110516566
XM_036956547.1 mRNA downstream 246483 824590 ~ 851764 (-) False LOC110516566
XM_036956548.1 mRNA downstream 246484 824590 ~ 851763 (-) False LOC110516566
XM_036958447.1 mRNA downstream 312873 585735 ~ 785374 (-) True cacna2d4a
XR_005038452.1 mRNA downstream 515230 581374 ~ 583017 (-) False LOC118942823
XM_036956557.1 mRNA upstream 215373 1319221 ~ 1347903 (-) False LOC110511372
XM_036956556.1 mRNA upstream 215373 1319221 ~ 1348497 (-) False LOC110511372
XM_036956561.1 mRNA upstream 244751 1348599 ~ 1354980 (-) False LOC110527029
XM_036956558.1 mRNA upstream 244751 1348599 ~ 1357031 (-) False LOC110527029
XM_036956559.1 mRNA upstream 244751 1348599 ~ 1357031 (-) False LOC110527029
TU1945775 other downstream 743738 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 215379 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 265301 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1018681 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1084585 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1468826 2572674 ~ 2575261 (-) False G1701824

Expression Profile