RNA id: TU1946204


Basic Information

Item Value
RNA id TU1946204
length 469
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1700658
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1205145 ~ 1205665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATAATTACACAGCCTCCAGTCTAAAATCAATCTGTAACTATAATTACACAGCCTCCAGTCTAAAATCAATCTGTAACTATAATTAAACAGCCTACATACTAAATTCAACCTGTAACTTTAGTTACACCGCCTACAGACTAAAATCAATCTCTGATACTATAACCTCTCAGGTGACATACAGTGAGGTCATACAGTGAGGTCATACAGTAAGGTCATACAGTGAGGTCATACAGTAAGGTCATACAGTGAGGTCATACAGTAAGGTCATACAGTGAGGTCATACAGTGAGGTCATACAGTGAGGTCATACAGTAAGGTCATACAGTGAGGTCATACAGTAAGGTCATACAGTGAGTTCATACAGTAAGGTCATACAGTAAGGTCATACAGTGAGGTCATACAGTGAGGTCATACAGTGACATGATTGACTGCCCTTGAGGTACAGGAAGTAGGTATTAGATTATGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946158 lncRNA downstream 67474 1124574 ~ 1137671 (-) True G1700621
TU1946148 lncRNA downstream 101297 1098247 ~ 1103848 (-) True G1700612
TU1946146 lncRNA downstream 114924 1089848 ~ 1090221 (-) True G1700610
TU1946097 lncRNA downstream 170745 1033682 ~ 1034400 (-) True G1700569
TU1946119 lncRNA downstream 180994 1021916 ~ 1024151 (-) True G1700584
TU1946248 lncRNA upstream 75420 1281085 ~ 1283069 (-) True G1700697
TU1946282 lncRNA upstream 107291 1312956 ~ 1315950 (-) True G1700712
TU1946296 lncRNA upstream 151899 1357564 ~ 1359274 (-) False G1700726
TU1946302 lncRNA upstream 151899 1357564 ~ 1359669 (-) True G1700726
TU1946255 lncRNA upstream 211003 1416668 ~ 1485260 (-) True G1700701
XM_036956549.1 mRNA downstream 353379 824590 ~ 851766 (-) False LOC110516566
XM_036956547.1 mRNA downstream 353381 824590 ~ 851764 (-) False LOC110516566
XM_036956548.1 mRNA downstream 353382 824590 ~ 851763 (-) False LOC110516566
XM_036958447.1 mRNA downstream 419771 585735 ~ 785374 (-) True cacna2d4a
XR_005038452.1 mRNA downstream 622128 581374 ~ 583017 (-) False LOC118942823
XM_036956557.1 mRNA upstream 113556 1319221 ~ 1347903 (-) False LOC110511372
XM_036956556.1 mRNA upstream 113556 1319221 ~ 1348497 (-) False LOC110511372
XM_036956561.1 mRNA upstream 142934 1348599 ~ 1354980 (-) False LOC110527029
XM_036956558.1 mRNA upstream 142934 1348599 ~ 1357031 (-) False LOC110527029
XM_036956559.1 mRNA upstream 142934 1348599 ~ 1357031 (-) False LOC110527029
TU1945775 other downstream 850636 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 113562 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 163484 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 916864 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 982768 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1367009 2572674 ~ 2575261 (-) False G1701824

Expression Profile