RNA id: TU1944758


Basic Information

Item Value
RNA id TU1944758
length 1210
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G1699548
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1306199 ~ 1307614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCTACCACTTTACCATCCTACCACGTGACCATCCTACCACGTTACCATCCTACCACGTTACCATCCTACCACGTTACCATACTACCACGTTACCATTCTACTACGTTACCATACTACCACGTTACCATCCTACCACGTTACCATCCTACCACATTACCATCCTACCACGTTATCATTCTACCACATTATCATTCTACCACGTTACCATCCTACCACGTTACCATCCTACCGCGTTATCATTCTACCACGTTATCATTCTACCATGTTACCATCCTACCACGTTACCATCCTACCACGTTACCATTCCACCACGTTATCATCCTACCACGTTACCATCATACCTCATTACCATCCTACCGCGTTACCATTCTACCACGTTACCATCCTACCACGTTACCATCATACCATTTTATCATCCTACCATGTTACCATCCTACCATTTTAATATCCTACCATGTTACCATCCTACCGCATTACCATCCTACCACACTACATCCTACCACATTACCATCCTACCACGTTACCATCCTACCGCGTTACCAGCCTGTTAAAGTTCCCATGTTGTATAGCTAGCTGCAGGGTAACTAAGCTCCTCTCTGAAGGCTCACACTTATAGCCATATAGCCTGATGAATGTTTACTTGAAACGATGACACCCCACTCCAAAATAATGCAACGCTTGTGAACTTAGAGACTTCCACTCACCCACCCCTTCCCCCCACCATCCTATTTCTACAGGATAGATTATTGTTGTTTCTGTACATCCCCAACAAACTGTGCCATACACATATccatatacatacagtacttcAAGAATACTTCAAGAGTACTTCAAGAGTACTTCATAGTACTTTTGACTTTGGGAGGCCTGAGACCCATCGTTTGAGGCTGTGAGTTTGTGAGAGAATGCCAGAGGCTGGTACAATCCCTGTGAGGAGTTGGTACATCAGTCATGACGTCCGTGATGTTGGTTGGACACTAACAGAATATGTTGGTACAGTGAGTGGGTGCTTGCAGTCCACAAGATATGCAAAAACAATGCACTAACTTTAAACAACAAGATCCATATTATTaattataaaacatttttaaaaaatacagttgtaCAAAAGAAGTGATAAAGAGAAGAAATTGTATTATAGATATAatatatttatgtttttgtttttgttgggtTACAGCGTCATTTTAAATTGAGGAAGAAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944766 lncRNA upstream 3422 1302402 ~ 1302777 (+) False LOC110518351
TU1944959 lncRNA upstream 99368 1205771 ~ 1206831 (+) True G1699693
TU1944958 lncRNA upstream 99520 1205088 ~ 1206679 (+) False G1699693
TU1944919 lncRNA upstream 182126 1101926 ~ 1124073 (+) True G1699659
TU1944909 lncRNA upstream 218582 1087063 ~ 1087617 (+) True G1699652
TU1944755 lncRNA downstream 198 1307812 ~ 1308744 (+) True G1699547
TU1944775 lncRNA downstream 1215 1308829 ~ 1309150 (+) True G1699553
TU1944774 lncRNA downstream 3426 1311040 ~ 1311740 (+) False G1699552
TU1944773 lncRNA downstream 3641 1311255 ~ 1311740 (+) True G1699552
TU1944737 lncRNA downstream 5165 1312779 ~ 1316397 (+) False G1699546
XM_036956550.1 mRNA upstream 296 1156714 ~ 1305903 (+) False LOC110518351
XM_036956571.1 mRNA downstream 169266 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 176413 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 182079 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 209748 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 209855 1517469 ~ 1600082 (+) False LOC110517600
TU1944767 other upstream 1466 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 205978 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 220173 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1164950 60319 ~ 141249 (+) True LOC118942820
TU1944994 other downstream 34885 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 230342 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 358142 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 450855 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 560080 1867694 ~ 1869554 (+) False G1699934

Expression Profile