RNA id: TU1944775


Basic Information

Item Value
RNA id TU1944775
length 322
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1699553
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1308829 ~ 1309150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAAATAGTTGCTATGAGAGACAGGGGAAAATAGTTGTTGAATATAAGACTTGTTGTCTGTCTGACATTATCGTTGCGTTATTGTTTTTACGTGCATGATGTGAAATAGTTTTAGATGTGGTCTCTTTGAGAGCGTATTCCCCACAAGATAGACCCGGTAGACaaattacatttttatcccatTGACAATCCATCTGACGAATAAGGATATATATATTAATTGAAGGTATACATAGTTTTGGGAGAGAGTTTATGAACAGGAGGAAACATCAAAGTATTATTGTATAATGTGCTTGGACCAAAAGACATAGCACTGGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944755 lncRNA upstream 85 1307812 ~ 1308744 (+) True G1699547
TU1944758 lncRNA upstream 1215 1306199 ~ 1307614 (+) False G1699548
TU1944757 lncRNA upstream 1548 1306199 ~ 1307281 (+) False G1699548
TU1944759 lncRNA upstream 1548 1306199 ~ 1307281 (+) True G1699548
TU1944766 lncRNA upstream 6052 1302402 ~ 1302777 (+) False LOC110518351
TU1944774 lncRNA downstream 1890 1311040 ~ 1311740 (+) False G1699552
TU1944773 lncRNA downstream 2105 1311255 ~ 1311740 (+) True G1699552
TU1944737 lncRNA downstream 3629 1312779 ~ 1316397 (+) False G1699546
TU1944739 lncRNA downstream 3629 1312779 ~ 1315961 (+) False G1699546
TU1944748 lncRNA downstream 3629 1312779 ~ 1315961 (+) False G1699546
XM_036956550.1 mRNA upstream 2926 1156714 ~ 1305903 (+) False LOC110518351
XM_036956571.1 mRNA downstream 167730 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 174877 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 180543 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 208212 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 208319 1517469 ~ 1600082 (+) False LOC110517600
TU1944767 other upstream 4096 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 208608 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 222803 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1167580 60319 ~ 141249 (+) True LOC118942820
TU1944994 other downstream 33349 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 228806 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 356606 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 449319 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 558544 1867694 ~ 1869554 (+) False G1699934

Expression Profile