RNA id: TU1944739


Basic Information

Item Value
RNA id TU1944739
length 2949
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G1699546
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1312779 ~ 1384859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACTCTGTACCACAGTACTACAGATTCCTTTACTAAAAGATGTGACTCTGTACCACAGTACTACAGATGGATCTTATATTTTCTTGTAAATTAATCGTTGTTGATCATTTTGATCGAGACATAAGTATTTTAAGAACTATTTTaaatatagactttattttccATTTCTAGGTAAAGTCCAGATCTAGTTAGCGTTTACTAATTAAACAACATCTCTCATCCGTTTCcttttaaaaataaatgaaagaACATCTCTTTTTCAGTTTTGTTGTACAACCATTATACGTTATGTAATGGGGGAAGAAATCACAAAACTGGTTATGAATTAAAAACACTATTTTATATATCCTGAATGACACATATATCTATAGTACTTCATTATATTGTGGAGAGCATATTTTTTAGGGAGGGTAACTGGAGTAGCGAGTTGTAGGCTGAATAGAAACCATTTAAGATGCTAGAGGTAGCTACAGTATAGAAAGAGCTCATACTGCTGAGACAACTCACAACGTCTGGGCGCGGTTACCAGAGAGGAAACCAACCGTCTTGTTGAGGATTTACATTTGAATCAAAACGCTTCGCCCCTCTTGAAGATGTAATGTTTCCCCCTGATCCCACGTCATGCTAGCAACACAAGGCTCCATTAGAAACGTGTTGAATGTGGGTCCTTTGCTGCTTgtgcgtccgtccgtccgtccatccacaCGGCACGGGACAGGTCAAAGGGCATGCTCCACTAGTAGAATGGAAGCATGCTGTTTTGACCTCTCACCTTTGACCTCTGACTCTCGACTGACAGCGTCCACTTTGAGCTGCATAGGTTATAACTTCCATATTAACCTTGATAGACAGGACTTAACTAACCCAGAACAACAACCCTACATTAGTTTGACGtcaacaaaccccccccccccccccccccccccccaagagtaGCAAAATCAGGAGCACCTTTCTTCTAAAGTCCTCTTCTTAAAAGACTGTTAGTATATTAAAACTATTGATTATAATGATCATTATTATGCAGACGTGTCGGAGACAACATTTCTAGAGGAGATCACTATTTTGCACATACACCACTATCTAGTTTGACTATGACTGCTCTTACAAGATAAAAGGCGCTGTCTAGAACCTTAAttaaagggttattcggctgtctccataggagaaccattttgggttccacgtagaaccctttcaatggagggttctaaatggaaccaaaAAAAGGGTTCTGTCTGGAACcttaaagggttatttggctgtctccataggagaacccttttgggttccacgtagaaccctttcaatggagggttctaaatggaaccaaaAAAAGGGTTCTGTCTGGAACcaaaaagagttctcctATGGGGTCAGCTGAATTAACCCCTTGTGGAACCATTTTTTTCTAAGAATATACACAGAGGCGTTGAAAGGAAAGAGTTTTAAGAAGTTATGTCTAGATTTAAAAGATAGCATGAATATGACTGTCTGAAATAGCacccattccctttatagtgcactacgtttgaccactgAAGgccactggtctaaagtagtgcccttatgtagggaatagggttccatttgagaatCAGACTAGGACTCGTTTTCAAGAGGCCTTTACTGGCCAGTGAGCAGGTGTCAGTTGGTTGAAGCAGACTAGGATTCGTTTTCAAGAGGCCTTACTGGCCAGTGAGCAGGTGTCAGTTGGTTGAATCAGACTAGGACTCGTTTTCAAGAGGCCTTACTGGCCAGTGAGCAGGTGTCAGTTGGTTGAATCAGACTAGGACTCGTTTTCAAGAGGCCTTACTGGCCAGTGAGCAGGTGTCAGTTGGTTGAAGCAGACTAGGACTCGTTTTCAAGAGGCCTTTACTGGCCAGTGAGCAGGTGTCAGTTAGTTGAATCAGACTAGGACTCGTTTTCAAGAGGCCTTACTGGCCAGTGAGCAGGTGTCAGTTGGTTGAATCAGACTAGGACTCGTTTTCAAGAGGCCTTACTGGCCAGTGAGTAGGTGTCAGTCGGTTGAATCATGaactctccctctgtttcttccAGGTCGGTTAAGATAAATATTGCACCGTTATACTGTAGCATTCCACAGTACGGTTCCAGATTCCACATGGAGCAAACACAGTATTTTGATACAAAATATTCAGACATATTATAAGATCACTTTATTGAGGTTTAACTGTTGTTCTTCTTTTCCAACATAAGTCGTTTTTCTGGTTTGATTTGACCTTCCTAAAGCCACGTCGGAGAGAGATTATTGTTTACCTGGTATGGATAACAGAACACCGAGGATGAGTAGTTGACTATTGGTGATGAAGAGGGGTTTGTGTGACTATCAAAGTCATAAATagtttgggtggggggggggggggggggttggttaaTGTTGAGTTAAAGACGTTGTTTTATTGGTCCGCGTCTCACTTTAAGGCAGCAGTAGAACGTTGTACCCATCAGGTTTAAACAAGTCTGTAATACATTTAAATACTTCAGTAATGCCCTAAATCGTGATTTAGTCAATCATGCACAGAATCAGAAGACTGACTGGTGGAAGTGGAAGGATAGACCACTTTTTGGCAAAGTCGTCTGTCCTTATTGCGTTTATATGTGAAAGAACTACTCACGAGAAACAACAAAAGTAATTTTTTTGTGATATTAGTAGTGGCACTACTGTTAAATGTAGTATTTTAAGAAGAACAGCACTATTTATGGTCATTAAAATGAACTAGAATGTGTATTGTGCATTATGGTAGCTTTGGAGGCAGCCATCTTGTTTTGTATCAATCTCCTCATGCTCAGAGACAGTCACTCACTTCATGTAAGGGGTTCGACTAGTTTTGGGGGAGTTGTTGAGTGGACTTGCCCAAATCCGAGCCCCCTTTTCTCCTTTGAATGACAAGTCTGCATGGTCTCACCAACAGACATTACCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944774 lncRNA upstream 1039 1311040 ~ 1311740 (+) False G1699552
TU1944773 lncRNA upstream 1039 1311255 ~ 1311740 (+) True G1699552
TU1944775 lncRNA upstream 3629 1308829 ~ 1309150 (+) True G1699553
TU1944755 lncRNA upstream 4035 1307812 ~ 1308744 (+) True G1699547
TU1944759 lncRNA upstream 5498 1306199 ~ 1307281 (+) True G1699548
TU1944988 lncRNA downstream 5393 1321354 ~ 1321902 (+) True G1699720
TU1944989 lncRNA downstream 6008 1321969 ~ 1323818 (+) True G1699721
TU1945003 lncRNA downstream 36978 1352939 ~ 1354797 (+) True G1699730
TU1945006 lncRNA downstream 39452 1355413 ~ 1357029 (+) False G1699731
TU1945007 lncRNA downstream 39452 1355413 ~ 1357029 (+) False G1699731
XM_036956550.1 mRNA upstream 6876 1156714 ~ 1305903 (+) False LOC110518351
XM_036956571.1 mRNA downstream 160919 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 168066 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 173732 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 201401 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 201508 1517469 ~ 1600082 (+) False LOC110517600
TU1944767 other upstream 8046 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 212558 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 226753 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1171530 60319 ~ 141249 (+) True LOC118942820
TU1944994 other downstream 26538 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 221995 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 349795 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 442508 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 551733 1867694 ~ 1869554 (+) False G1699934

Expression Profile